Variant report

Variant	rs150422594
Chromosome Location	chr3:159724000-159724001
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159479933..159482326-chr3:159723100..159725647,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250588	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv1806743	chr3:159723529-159744022	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159707200-159724200	Weak transcription	Psoas Muscle	Psoas
2	chr3:159711600-159724200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr3:159712000-159729600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:159713000-159734800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:159719800-159724200	Weak transcription	Brain Anterior Caudate	brain
6	chr3:159720000-159724200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:159720000-159724200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:159720200-159724200	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:159720800-159724000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:159721000-159724200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr3:159721000-159730000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:159721400-159724200	Weak transcription	Osteobl	bone
13	chr3:159721800-159724200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:159721800-159724200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:159722000-159724000	Weak transcription	NHLF	lung
16	chr3:159722800-159725000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:159722800-159725000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:159723400-159724800	Enhancers	GM12878-XiMat	blood
19	chr3:159723600-159724800	Enhancers	NHDF-Ad	bronchial
20	chr3:159723800-159724600	Enhancers	Fetal Muscle Leg	muscle
21	chr3:159723800-159724800	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr3:159724000-159724400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:159724000-159724400	Enhancers	Stomach Smooth Muscle	stomach
24	chr3:159724000-159724400	Enhancers	A549	lung
25	chr3:159724000-159725000	Enhancers	NHLF	lung

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