Variant report

Variant	rs150424699
Chromosome Location	chr2:86563563-86563564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86422237..86423747-chr2:86562559..86564958,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000273080	Chromatin interaction
ENSG00000132305	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	esv3357801	chr2:86563266-86566214	Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86552200-86563800	Weak transcription	Aorta	Aorta
2	chr2:86562400-86565000	Active TSS	Fetal Brain Female	brain
3	chr2:86563000-86563600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
4	chr2:86563000-86563600	Enhancers	Psoas Muscle	Psoas
5	chr2:86563000-86563800	Bivalent Enhancer	Stomach Mucosa	stomach
6	chr2:86563000-86564000	Flanking Active TSS	Brain Germinal Matrix	brain
7	chr2:86563000-86564000	Flanking Active TSS	Fetal Brain Male	brain
8	chr2:86563000-86564000	Bivalent Enhancer	Placenta	Placenta
9	chr2:86563000-86564000	Flanking Active TSS	Pancreas	Pancrea
10	chr2:86563000-86564000	Flanking Active TSS	Right Ventricle	heart
11	chr2:86563000-86564200	Flanking Active TSS	Colon Smooth Muscle	Colon
12	chr2:86563000-86564200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
13	chr2:86563000-86564200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
14	chr2:86563000-86564200	Flanking Active TSS	Hela-S3	cervix
15	chr2:86563000-86565200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
16	chr2:86563000-86565600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
17	chr2:86563200-86563600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
18	chr2:86563200-86563600	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
19	chr2:86563200-86563600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr2:86563200-86563600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
21	chr2:86563200-86563600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr2:86563200-86563600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
23	chr2:86563200-86563600	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr2:86563200-86563600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
25	chr2:86563200-86563600	Flanking Bivalent TSS/Enh	Rectal Smooth Muscle	rectum
26	chr2:86563200-86563600	Flanking Active TSS	Right Atrium	heart
27	chr2:86563200-86563600	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
28	chr2:86563200-86563800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr2:86563200-86563800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr2:86563200-86563800	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr2:86563200-86563800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr2:86563200-86563800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr2:86563200-86563800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr2:86563200-86563800	Flanking Active TSS	Fetal Heart	heart
35	chr2:86563200-86563800	Bivalent Enhancer	Fetal Lung	lung
36	chr2:86563200-86563800	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
37	chr2:86563200-86563800	Bivalent Enhancer	A549	lung
38	chr2:86563200-86563800	Bivalent Enhancer	NHEK	skin
39	chr2:86563200-86564000	Bivalent Enhancer	Liver	Liver
40	chr2:86563200-86564000	Flanking Active TSS	Brain Angular Gyrus	brain
41	chr2:86563200-86564000	Bivalent Enhancer	Esophagus	oesophagus
42	chr2:86563200-86564000	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
43	chr2:86563200-86564000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
44	chr2:86563200-86564000	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
45	chr2:86563200-86564000	Enhancers	Spleen	Spleen
46	chr2:86563200-86564200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
47	chr2:86563200-86564200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
48	chr2:86563200-86564200	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
49	chr2:86563200-86564400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
50	chr2:86563200-86564400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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