Variant report

Variant	rs150446767
Chromosome Location	chr12:106622923-106622924
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:106621785..106624266-chr12:106738678..106741420,2	MCF-7	breast:
2	chr12:106622589..106625717-chr12:106638331..106640361,3	MCF-7	breast:
3	chr12:106620792..106623041-chr12:106734428..106736723,2	MCF-7	breast:
4	chr12:106618176..106623447-chr12:106639085..106644031,7	MCF-7	breast:
5	chr12:106622227..106624483-chr12:107349565..107351095,2	K562	blood:
6	chr12:106617980..106623111-chr12:106673260..106676714,5	MCF-7	breast:
7	chr12:106620786..106622962-chr12:106640518..106642749,2	MCF-7	breast:
8	chr12:106620940..106625050-chr12:106630217..106634289,4	MCF-7	breast:
9	chr12:106622344..106624016-chr12:106673655..106676594,2	MCF-7	breast:
10	chr12:106622014..106624785-chr12:106736683..106738357,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000258355	Chromatin interaction
ENSG00000151135	Chromatin interaction
ENSG00000136026	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830730	chr12:106621530-106642222	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv1839947	chr12:106622186-106642064	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1797996	chr12:106622186-106642222	Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106606600-106626400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:106618000-106632000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr12:106618000-106632200	Weak transcription	Psoas Muscle	Psoas
4	chr12:106618600-106630600	Weak transcription	Ovary	ovary
5	chr12:106618600-106632200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr12:106620800-106623000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr12:106620800-106623200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr12:106620800-106630400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr12:106621000-106625000	Weak transcription	Left Ventricle	heart
10	chr12:106621200-106632000	Weak transcription	Brain Hippocampus Middle	brain
11	chr12:106621200-106632600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr12:106621400-106630200	Weak transcription	NHLF	lung
13	chr12:106621400-106632600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr12:106621400-106638200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr12:106621600-106624800	Weak transcription	Right Atrium	heart
16	chr12:106621600-106626600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr12:106621600-106630400	Weak transcription	HSMM	muscle
18	chr12:106621600-106630600	Weak transcription	Liver	Liver
19	chr12:106621600-106630600	Weak transcription	A549	lung
20	chr12:106621600-106631400	Weak transcription	Adipose Nuclei	Adipose
21	chr12:106621600-106631800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr12:106621600-106632600	Weak transcription	Colonic Mucosa	Colon
23	chr12:106621600-106632800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr12:106621800-106627600	Weak transcription	Esophagus	oesophagus
25	chr12:106621800-106628000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr12:106621800-106628600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr12:106621800-106629200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr12:106621800-106629600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr12:106621800-106629800	Weak transcription	Stomach Mucosa	stomach
30	chr12:106621800-106630400	Weak transcription	Fetal Lung	lung
31	chr12:106621800-106630600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr12:106621800-106630600	Weak transcription	Spleen	Spleen
33	chr12:106621800-106631800	Weak transcription	Gastric	stomach
34	chr12:106621800-106631800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr12:106621800-106632800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr12:106622000-106623200	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr12:106622000-106626600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr12:106622000-106627800	Weak transcription	NHEK	skin
39	chr12:106622000-106629000	Weak transcription	Fetal Heart	heart
40	chr12:106622000-106629200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr12:106622000-106630000	Weak transcription	Brain Germinal Matrix	brain
42	chr12:106622000-106630600	Weak transcription	Lung	lung
43	chr12:106622000-106632200	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr12:106622200-106628000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr12:106622200-106632000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr12:106622200-106639000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr12:106622200-106639600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr12:106622400-106625600	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr12:106622400-106627400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr12:106622400-106632200	Weak transcription	Primary T helper cells fromperipheralblood	blood

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