Variant report
Variant | rs1505368 |
---|---|
Chromosome Location | chr2:213297253-213297254 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10166403 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs10167244 | 0.86[JPT][hapmap];0.80[EUR][1000 genomes] |
rs10188926 | 0.86[JPT][hapmap] |
rs10194540 | 0.86[JPT][hapmap] |
rs10201067 | 0.86[CEU][hapmap];0.84[EUR][1000 genomes] |
rs10202760 | 0.86[JPT][hapmap] |
rs11894208 | 0.88[JPT][hapmap] |
rs1283310 | 0.82[CEU][hapmap] |
rs13383863 | 0.85[JPT][hapmap] |
rs13388956 | 0.86[JPT][hapmap] |
rs13393577 | 0.86[JPT][hapmap] |
rs13400881 | 0.86[JPT][hapmap] |
rs13413335 | 0.85[JPT][hapmap] |
rs13417523 | 0.82[JPT][hapmap] |
rs1394780 | 0.86[JPT][hapmap] |
rs4106226 | 0.86[CEU][hapmap];0.86[EUR][1000 genomes] |
rs6435701 | 0.82[CEU][hapmap] |
rs6712295 | 0.86[JPT][hapmap] |
rs6756468 | 0.86[JPT][hapmap] |
rs7565257 | 0.82[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv834527 | chr2:213115966-213334308 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionmiRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv1014680 | chr2:213142147-213301614 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionmiRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv1004573 | chr2:213186537-213365252 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionmiRNA | 2 gene(s) | inside rSNPs | diseases |
4 | nsv875811 | chr2:213200920-213347104 | Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionmiRNA | 2 gene(s) | inside rSNPs | diseases |
Disease | PMID | Source |
---|---|---|
Symmetrical dimethylarginine levels | 24159190 | GWAS catalog |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:213294600-213298600 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
2 | chr2:213296800-213298800 | Weak transcription | Fetal Heart | heart |