Variant report

Variant	rs1505583
Chromosome Location	chr12:44469844-44469845
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11612946	1.00[CHB][hapmap]
rs1688726	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1701094	0.89[JPT][hapmap]
rs2657575	0.89[JPT][hapmap]
rs7136217	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs7303909	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832390	chr12:44318071-44512114	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1041188	chr12:44331098-44528712	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832391	chr12:44394137-44552555	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44454000-44470400	Weak transcription	Fetal Brain Female	brain
2	chr12:44457000-44470600	Weak transcription	Psoas Muscle	Psoas
3	chr12:44458400-44482200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:44460000-44470600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr12:44463400-44470600	Weak transcription	Aorta	Aorta
6	chr12:44464200-44473600	Weak transcription	Fetal Intestine Small	intestine
7	chr12:44465200-44470600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr12:44467000-44470600	Weak transcription	Ovary	ovary
9	chr12:44467600-44482600	Weak transcription	Left Ventricle	heart
10	chr12:44469200-44470800	Weak transcription	Gastric	stomach
11	chr12:44469400-44470400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr12:44469400-44495600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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