Variant report

Variant	rs150566911
Chromosome Location	chr3:49590806-49590807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr3:49590533-49590847	K562	blood:	n/a	chr3:49590696-49590709 chr3:49590720-49590731 chr3:49590718-49590731
2	CEBPB	chr3:49590627-49591233	A549	lung:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
3	CEBPB	chr3:49590681-49591121	MCF-7	breast:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
4	CEBPB	chr3:49590774-49591120	A549	lung:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
5	REST	chr3:49590593-49593431	HL-60	blood:	n/a	chr3:49591201-49591211 chr3:49590761-49590779 chr3:49592639-49592653 chr3:49590764-49590777 chr3:49592634-49592652 chr3:49592633-49592653 chr3:49592633-49592653
6	SPI1	chr3:49590583-49590815	GM12891	blood:	n/a	chr3:49590699-49590708
7	POLR2A	chr3:49590796-49590902	HUVEC	blood vessel:	n/a	n/a
8	CEBPB	chr3:49590673-49591186	ECC-1	luminal epithelium:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
9	CEBPB	chr3:49590732-49591137	Hela-S3	cervix:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
10	CEBPB	chr3:49590721-49591119	K562	blood:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
11	REST	chr3:49590783-49593080	H1-neurons	neurons:	n/a	chr3:49591201-49591211 chr3:49592639-49592653 chr3:49592634-49592652 chr3:49592633-49592653 chr3:49592633-49592653
12	SPI1	chr3:49590638-49590918	HL-60	blood:	n/a	chr3:49590699-49590708
13	CEBPB	chr3:49590741-49591116	A549	lung:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
14	CEBPB	chr3:49590716-49591152	ECC-1	luminal epithelium:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
15	CEBPB	chr3:49590694-49591147	K562	blood:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
16	SPI1	chr3:49590555-49590978	HL-60	blood:	n/a	chr3:49590699-49590708
17	RCOR1	chr3:49590681-49592523	IMR90	lung:	n/a	n/a
18	CEBPB	chr3:49590737-49591186	MCF-7	breast:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
19	CEBPB	chr3:49590746-49591119	HepG2	liver:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
20	CEBPB	chr3:49590748-49591122	H1-hESC	embryonic stem cell:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
21	CEBPB	chr3:49590737-49591129	IMR90	lung:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
22	CEBPB	chr3:49590771-49591026	K562	blood:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
23	CEBPB	chr3:49590729-49591099	HepG2	liver:	n/a	chr3:49590925-49590934 chr3:49590923-49590934

No.	Distal block	Cell Line	Cell type
1	chr3:49590547..49592695-chr3:49709214..49711684,3	MCF-7	breast:
2	chr3:49588932..49590951-chr3:49710802..49712975,2	K562	blood:
3	chr3:49582614..49585275-chr3:49588937..49591341,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NICN1-1	chr3:49590374-49591536	NONHSAT089709

Variant related genes	Relation type
BSN	TF binding region
ENSG00000164062	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834687	chr3:49448632-49631788	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3325224	chr3:49590473-49593321	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49588200-49591000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr3:49588800-49591000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr3:49589000-49591200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:49589400-49591200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr3:49589600-49591200	Enhancers	Primary hematopoietic stem cells	blood
6	chr3:49589800-49591000	Enhancers	Lung	lung
7	chr3:49590400-49591000	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr3:49590400-49591000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr3:49590400-49591000	Enhancers	Fetal Kidney	kidney
10	chr3:49590400-49591000	Enhancers	Fetal Muscle Leg	muscle
11	chr3:49590400-49591000	Enhancers	Pancreas	Pancrea
12	chr3:49590400-49591000	Enhancers	K562	blood
13	chr3:49590400-49591200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
14	chr3:49590400-49591400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:49590400-49591400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
16	chr3:49590600-49591000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:49590600-49591000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr3:49590600-49591000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:49590600-49591000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:49590600-49591000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:49590600-49591000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:49590600-49591000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:49590600-49591000	Enhancers	Adipose Nuclei	Adipose
24	chr3:49590600-49591000	Enhancers	Colon Smooth Muscle	Colon
25	chr3:49590600-49591000	Enhancers	Duodenum Mucosa	Duodenum
26	chr3:49590600-49591000	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
27	chr3:49590600-49591000	Enhancers	Fetal Brain Male	brain
28	chr3:49590600-49591000	Enhancers	Fetal Lung	lung
29	chr3:49590600-49591000	Bivalent Enhancer	Fetal Thymus	thymus
30	chr3:49590600-49591000	Enhancers	Left Ventricle	heart
31	chr3:49590600-49591000	Enhancers	Rectal Smooth Muscle	rectum
32	chr3:49590600-49591000	Enhancers	Right Atrium	heart
33	chr3:49590600-49591000	Enhancers	HSMMtube	muscle
34	chr3:49590600-49591000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
35	chr3:49590600-49591200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr3:49590600-49591200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr3:49590600-49591200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr3:49590600-49591200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
39	chr3:49590600-49591200	Enhancers	Esophagus	oesophagus
40	chr3:49590600-49591200	Enhancers	Fetal Intestine Small	intestine
41	chr3:49590600-49591200	Enhancers	Fetal Muscle Trunk	muscle
42	chr3:49590600-49591200	Enhancers	Placenta	Placenta
43	chr3:49590600-49591200	Enhancers	Hela-S3	cervix
44	chr3:49590600-49591200	Flanking Active TSS	HepG2	liver
45	chr3:49590600-49591400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
46	chr3:49590600-49591400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr3:49590600-49591400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
48	chr3:49590600-49591400	Flanking Active TSS	Brain Anterior Caudate	brain
49	chr3:49590600-49591400	Flanking Active TSS	Brain Cingulate Gyrus	brain
50	chr3:49590600-49591600	Flanking Active TSS	H1 Cell Line	embryonic stem cell

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