Variant report

Variant	rs150619538
Chromosome Location	chr9:14631900-14631901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv831517	chr9:14512924-14738206	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3362157	chr9:14542189-14791977	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv521363	chr9:14566406-14691897	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv892605	chr9:14585052-14709151	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv892606	chr9:14588049-14697022	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv892608	chr9:14589173-14689088	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv892609	chr9:14589173-14694302	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv613642	chr9:14592180-14639666	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	esv2752921	chr9:14593749-14694372	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv2755661	chr9:14615367-14660700	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv892610	chr9:14622952-14654900	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv3450970	chr9:14631802-14633750	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14594800-14633400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr9:14595600-14653600	Weak transcription	NHDF-Ad	bronchial
3	chr9:14596600-14634000	Weak transcription	Gastric	stomach
4	chr9:14596600-14653600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr9:14597000-14655000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:14597800-14633600	Weak transcription	Pancreas	Pancrea
7	chr9:14598200-14633200	Weak transcription	Fetal Stomach	stomach
8	chr9:14599800-14654000	Weak transcription	Fetal Heart	heart
9	chr9:14601400-14636800	Weak transcription	Small Intestine	intestine
10	chr9:14605600-14654800	Weak transcription	HSMM	muscle
11	chr9:14605800-14634000	Weak transcription	Esophagus	oesophagus
12	chr9:14610200-14654800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:14611200-14632800	Weak transcription	Placenta	Placenta
14	chr9:14612800-14641200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr9:14613600-14654600	Weak transcription	Fetal Kidney	kidney
16	chr9:14617200-14634000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr9:14617200-14646000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:14617400-14634200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr9:14619400-14633200	Weak transcription	Lung	lung
20	chr9:14619400-14653600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr9:14619400-14654800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr9:14619600-14654800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr9:14626400-14638600	Weak transcription	HUVEC	blood vessel
24	chr9:14626800-14655000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr9:14627600-14632800	Weak transcription	Brain Angular Gyrus	brain
26	chr9:14627800-14633200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:14627800-14643400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr9:14628000-14639400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr9:14628000-14640800	Weak transcription	Colon Smooth Muscle	Colon
30	chr9:14629200-14634000	Weak transcription	Dnd41	blood
31	chr9:14629200-14636400	Strong transcription	Primary B cells from peripheral blood	blood
32	chr9:14629400-14635800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr9:14629400-14637600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr9:14629400-14654600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr9:14629400-14655000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr9:14629800-14632000	Strong transcription	Primary T cells from cord blood	blood
37	chr9:14629800-14633600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr9:14630000-14632200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr9:14630000-14633200	Strong transcription	Primary hematopoietic stem cells	blood
40	chr9:14630000-14633400	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr9:14630000-14654400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr9:14630200-14632000	Strong transcription	Fetal Intestine Large	intestine
43	chr9:14630200-14637400	Strong transcription	Primary B cells from cord blood	blood
44	chr9:14630400-14633200	ZNF genes & repeats	Fetal Brain Female	brain
45	chr9:14630400-14654800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr9:14630600-14632600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr9:14630600-14633400	Strong transcription	Fetal Lung	lung
48	chr9:14630600-14635600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr9:14631000-14654000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr9:14631000-14654800	Weak transcription	Brain Anterior Caudate	brain

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