Variant report

Variant	rs150651962
Chromosome Location	chr15:45117139-45117140
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr15:45116535-45117370	HepG2	liver:	n/a	chr15:45116885-45116894
2	RXRA	chr15:45116414-45117354	HepG2	liver:	n/a	n/a
3	FOSL2	chr15:45116396-45117507	HepG2	liver:	n/a	chr15:45116900-45116910 chr15:45116900-45116910
4	HNF4A	chr15:45117025-45117214	HepG2	liver:	n/a	chr15:45117113-45117125 chr15:45117105-45117120 chr15:45117111-45117126
5	POLR2A	chr15:45116474-45117397	HepG2	liver:	n/a	n/a
6	POLR2A	chr15:45116522-45117337	HepG2	liver:	n/a	n/a
7	POLR2A	chr15:45116992-45117207	K562	blood:	n/a	n/a
8	SP1	chr15:45116336-45117437	HepG2	liver:	n/a	chr15:45116955-45116969 chr15:45116492-45116499
9	POLR2A	chr15:45116508-45117450	HepG2	liver:	n/a	n/a
10	FOXA1	chr15:45116235-45117346	HepG2	liver:	n/a	n/a
11	JUND	chr15:45116819-45117283	HepG2	liver:	n/a	chr15:45116900-45116910 chr15:45116900-45116910
12	RXRA	chr15:45116456-45117394	HepG2	liver:	n/a	n/a
13	MYBL2	chr15:45116485-45117420	HepG2	liver:	n/a	n/a
14	POLR2A	chr15:45116762-45117187	Hela-S3	cervix:	n/a	n/a
15	SIN3AK20	chr15:45116986-45117204	HepG2	liver:	n/a	n/a
16	TEAD4	chr15:45116290-45117404	HepG2	liver:	n/a	n/a
17	POLR2A	chr15:45116547-45117668	GM12892	blood:	n/a	n/a
18	HNF4G	chr15:45117039-45117192	HepG2	liver:	n/a	chr15:45117113-45117125 chr15:45117105-45117120 chr15:45117110-45117125
19	HEY1	chr15:45116416-45117405	HepG2	liver:	n/a	chr15:45116885-45116894
20	JUND	chr15:45116416-45117334	HepG2	liver:	n/a	chr15:45116900-45116910 chr15:45116900-45116910
21	POLR2A	chr15:45116472-45117756	GM12892	blood:	n/a	n/a
22	POLR2A	chr15:45117096-45117355	HepG2	liver:	n/a	n/a
23	TCF12	chr15:45116470-45117291	HepG2	liver:	n/a	chr15:45117158-45117165 chr15:45116495-45116505
24	POLR2A	chr15:45116528-45117341	HepG2	liver:	n/a	n/a
25	FOXA2	chr15:45117046-45117197	HepG2	liver:	n/a	n/a
26	POLR2A	chr15:45117137-45117322	HepG2	liver:	n/a	n/a
27	USF1	chr15:45116922-45117146	HepG2	liver:	n/a	n/a
28	MYBL2	chr15:45116386-45117345	HepG2	liver:	n/a	n/a
29	POLR2A	chr15:45116405-45117467	GM12891	blood:	n/a	n/a
30	HNF4A	chr15:45117031-45117210	HepG2	liver:	n/a	chr15:45117113-45117125 chr15:45117105-45117120 chr15:45117111-45117126
31	USF1	chr15:45116983-45117215	HepG2	liver:	n/a	n/a
32	POLR2A	chr15:45117038-45117587	GM12891	blood:	n/a	n/a
33	SIN3AK20	chr15:45116593-45117256	HepG2	liver:	n/a	n/a
34	POLR2A	chr15:45116457-45117188	SK-N-MC	brain:	n/a	n/a
35	POLR2A	chr15:45116416-45117213	GM12878	blood:	n/a	n/a
36	POLR2A	chr15:45116636-45117192	GM12892	blood:	n/a	n/a
37	FOSL2	chr15:45116389-45117304	HepG2	liver:	n/a	chr15:45116900-45116910 chr15:45116900-45116910
38	POLR2A	chr15:45116496-45117763	GM12892	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000259187	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758380	chr15:44968868-45422842	Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
2	esv2760029	chr15:44968868-45422842	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
3	nsv832990	chr15:44990765-45162714	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
4	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
5	nsv1048668	chr15:45094019-45284278	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv1050650	chr15:45096539-45229584	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2753798	chr15:45100852-45145764	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1048867	chr15:45100852-45289756	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	esv2757599	chr15:45100852-45383620	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
10	nsv1036204	chr15:45105374-45284278	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv1047353	chr15:45105374-45289756	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	nsv1040940	chr15:45105374-45300844	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
13	esv2753133	chr15:45105876-45268182	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
14	esv34494	chr15:45105876-45268208	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
15	nsv977707	chr15:45110592-45122696	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv1041613	chr15:45111367-45284278	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
17	esv18714	chr15:45115951-45118625	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45105800-45121600	Weak transcription	Fetal Intestine Small	intestine
2	chr15:45112000-45123000	Weak transcription	Esophagus	oesophagus
3	chr15:45112600-45120400	Weak transcription	Lung	lung
4	chr15:45113400-45119600	Weak transcription	Stomach Mucosa	stomach
5	chr15:45113600-45117200	Weak transcription	Liver	Liver
6	chr15:45113600-45117200	Weak transcription	HepG2	liver
7	chr15:45117000-45117400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr15:45117000-45117800	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links