Variant report

Variant	rs150652132
Chromosome Location	chr19:51574092-51574093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:51571883..51577686-chr19:51593894..51597603,10	MCF-7	breast:
2	chr19:51572190..51574304-chr19:51595106..51597426,2	MCF-7	breast:
3	chr19:51527498..51530009-chr19:51572818..51575532,3	MCF-7	breast:
4	chr19:51535511..51537089-chr19:51573976..51575477,2	K562	blood:
5	chr19:51572582..51577335-chr19:51583867..51587777,5	MCF-7	breast:
6	chr19:51472215..51472723-chr19:51573940..51574763,2	MCF-7	breast:
7	chr19:51547379..51548022-chr19:51574046..51574733,2	MCF-7	breast:
8	chr19:51567181..51568782-chr19:51572283..51574552,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000167759	Chromatin interaction
ENSG00000167757	Chromatin interaction
ENSG00000129437	Chromatin interaction
ENSG00000167755	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34104	chr19:51566170-51641675	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv520705	chr19:51574038-51575424	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51573200-51574800	Enhancers	HMEC	breast
2	chr19:51573400-51574600	Enhancers	K562	blood
3	chr19:51573600-51574600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr19:51573600-51574600	Enhancers	NHEK	skin
5	chr19:51573600-51574800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr19:51573600-51574800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr19:51573800-51574200	Enhancers	Pancreas	Pancrea
8	chr19:51573800-51574800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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