Variant report

Variant	rs1507069
Chromosome Location	chr1:98616396-98616397
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1118413	0.94[AFR][1000 genomes]
rs1487295	0.81[AFR][1000 genomes]
rs1487303	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1507064	0.94[AFR][1000 genomes]
rs1507067	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1507068	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1507070	0.94[AFR][1000 genomes]
rs2200585	0.91[AFR][1000 genomes]
rs2220332	0.90[AFR][1000 genomes]
rs2253341	0.94[AFR][1000 genomes]
rs2263255	0.94[AFR][1000 genomes]
rs2391906	0.91[AFR][1000 genomes]
rs2632300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2632303	0.95[AFR][1000 genomes]
rs2632304	0.95[AFR][1000 genomes]
rs2632308	0.89[AFR][1000 genomes]
rs2632311	0.91[AFR][1000 genomes]
rs2660306	0.91[AFR][1000 genomes]
rs2660307	0.94[AFR][1000 genomes]
rs2660308	0.94[AFR][1000 genomes]
rs2660309	0.94[AFR][1000 genomes]
rs2660310	0.94[AFR][1000 genomes]
rs2660311	0.94[AFR][1000 genomes]
rs2660312	0.90[AFR][1000 genomes]
rs2939963	0.94[AFR][1000 genomes]
rs355354	0.88[AFR][1000 genomes]
rs355356	0.87[AFR][1000 genomes]
rs355357	0.85[AFR][1000 genomes]
rs355360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs355361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs355363	0.94[AFR][1000 genomes]
rs355365	0.94[AFR][1000 genomes]
rs355366	0.94[AFR][1000 genomes]
rs355368	0.94[AFR][1000 genomes]
rs355369	0.87[AFR][1000 genomes]
rs355371	0.93[AFR][1000 genomes]
rs355372	0.87[AFR][1000 genomes]
rs355383	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs355384	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs355385	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs355387	0.82[AFR][1000 genomes]
rs6694396	0.87[ASN][1000 genomes]
rs6701393	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71657288	0.95[ASN][1000 genomes]
rs822564	0.87[AFR][1000 genomes]
rs822565	0.83[AFR][1000 genomes]
rs822567	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012958	chr1:98081528-98864746	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv830736	chr1:98488491-98663726	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv823631	chr1:98554257-98687985	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv462583	chr1:98554409-98645213	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv546875	chr1:98554409-98645213	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1007861	chr1:98601247-98632963	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:98615800-98636200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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