Variant report

Variant	rs150752813
Chromosome Location	chr15:56209001-56209002
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr15:56208949-56209757	SK-N-SH	brain:	n/a	n/a
2	POLR2A	chr15:56208821-56209581	U87	brain:	n/a	n/a
3	STAT3	chr15:56208899-56209037	MCF10A-Er-Src	breast:	n/a	n/a
4	CTCF	chr15:56207813-56210860	A549	lung:	n/a	chr15:56210210-56210228 chr15:56210216-56210225 chr15:56210212-56210225
5	TCF12	chr15:56208460-56209717	A549	lung:	n/a	n/a
6	FOSL2	chr15:56208977-56209679	A549	lung:	n/a	n/a
7	MAFK	chr15:56208832-56209524	IMR90	lung:	n/a	n/a
8	MYC	chr15:56208830-56209499	MCF10A-Er-Src	breast:	n/a	n/a
9	POLR2A	chr15:56208803-56209657	U87	brain:	n/a	n/a
10	POLR2A	chr15:56208392-56209563	MCF10A-Er-Src	breast:	n/a	n/a
11	POLR2A	chr15:56208830-56209657	U87	brain:	n/a	n/a
12	TCF12	chr15:56208835-56209657	SK-N-SH	brain:	n/a	n/a
13	FOSL2	chr15:56208967-56209781	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
NEDD4	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv569542	chr15:56185262-56210929	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv819986	chr15:56208434-56209256	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56176000-56216200	Weak transcription	Fetal Intestine Small	intestine
2	chr15:56188600-56218400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:56190000-56220000	Weak transcription	Pancreas	Pancrea
4	chr15:56190200-56221200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:56190400-56219800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:56200200-56213200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:56200800-56218000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr15:56201000-56230000	Weak transcription	Fetal Intestine Large	intestine
9	chr15:56201200-56217200	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr15:56203600-56209600	Active TSS	Skeletal Muscle Female	skeletal muscle
11	chr15:56204600-56209800	Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr15:56204800-56210400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:56206800-56217800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr15:56207400-56209200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:56207400-56209400	Flanking Active TSS	Hela-S3	cervix
16	chr15:56207400-56209600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:56207400-56209600	Active TSS	Psoas Muscle	Psoas
18	chr15:56207400-56210000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:56207400-56210400	Weak transcription	Dnd41	blood
20	chr15:56207600-56209200	Active TSS	Right Atrium	heart
21	chr15:56207600-56210000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:56207600-56210200	Flanking Active TSS	Osteobl	bone
23	chr15:56207600-56221200	Weak transcription	Right Ventricle	heart
24	chr15:56207800-56210600	Enhancers	HMEC	breast
25	chr15:56208000-56209600	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr15:56208200-56210400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr15:56208400-56209200	Active TSS	Brain Substantia Nigra	brain
28	chr15:56208400-56209200	Weak transcription	Fetal Kidney	kidney
29	chr15:56208400-56209400	Active TSS	Brain Anterior Caudate	brain
30	chr15:56208400-56209400	Flanking Active TSS	NHDF-Ad	bronchial
31	chr15:56208400-56210000	Flanking Active TSS	NH-A	brain
32	chr15:56208600-56209200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr15:56208600-56209200	Active TSS	Brain Inferior Temporal Lobe	brain
34	chr15:56208600-56209400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:56208600-56209400	Active TSS	Stomach Smooth Muscle	stomach
36	chr15:56208600-56209600	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr15:56208600-56210400	Enhancers	Rectal Smooth Muscle	rectum
38	chr15:56208600-56218000	Weak transcription	Esophagus	oesophagus
39	chr15:56208800-56209200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr15:56208800-56209200	Active TSS	Aorta	Aorta
41	chr15:56208800-56209200	Active TSS	Brain Hippocampus Middle	brain
42	chr15:56208800-56209200	Active TSS	HSMMtube	muscle
43	chr15:56208800-56209400	Active TSS	HSMM	muscle
44	chr15:56208800-56209600	Flanking Active TSS	NHEK	skin
45	chr15:56208800-56221600	Weak transcription	Primary hematopoietic stem cells	blood
46	chr15:56208800-56230000	Weak transcription	Liver	Liver
47	chr15:56209000-56209200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr15:56209000-56209200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr15:56209000-56209200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr15:56209000-56209400	Active TSS	Muscle Satellite Cultured Cells	--

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