Variant report

Variant	rs150781565
Chromosome Location	chr12:106621743-106621744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:106620792..106623041-chr12:106734428..106736723,2	MCF-7	breast:
2	chr12:106618176..106623447-chr12:106639085..106644031,7	MCF-7	breast:
3	chr12:106619967..106622887-chr12:106695577..106697877,2	MCF-7	breast:
4	chr12:106617980..106623111-chr12:106673260..106676714,5	MCF-7	breast:
5	chr12:106620786..106622962-chr12:106640518..106642749,2	MCF-7	breast:
6	chr12:106620940..106625050-chr12:106630217..106634289,4	MCF-7	breast:
7	chr12:106619722..106621935-chr12:106695466..106697508,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000258355	Chromatin interaction
ENSG00000166046	Chromatin interaction
ENSG00000136026	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830730	chr12:106621530-106642222	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106606600-106626400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:106618000-106632000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr12:106618000-106632200	Weak transcription	Psoas Muscle	Psoas
4	chr12:106618600-106630600	Weak transcription	Ovary	ovary
5	chr12:106618600-106632200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr12:106620600-106621800	Enhancers	Stomach Mucosa	stomach
7	chr12:106620800-106621800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr12:106620800-106621800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr12:106620800-106621800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr12:106620800-106621800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr12:106620800-106621800	Enhancers	Placenta	Placenta
12	chr12:106620800-106621800	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr12:106620800-106622000	Enhancers	Primary B cells from peripheral blood	blood
14	chr12:106620800-106622000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr12:106620800-106622000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr12:106620800-106622000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr12:106620800-106622000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr12:106620800-106622000	Enhancers	Fetal Heart	heart
19	chr12:106620800-106622000	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr12:106620800-106622000	Enhancers	Hela-S3	cervix
21	chr12:106620800-106622000	Enhancers	NHEK	skin
22	chr12:106620800-106622200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr12:106620800-106622200	Enhancers	Primary T cells from cord blood	blood
24	chr12:106620800-106622200	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr12:106620800-106622200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr12:106620800-106622200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr12:106620800-106622200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr12:106620800-106622200	Enhancers	HMEC	breast
29	chr12:106620800-106622400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
30	chr12:106620800-106622400	Enhancers	Primary T cells fromperipheralblood	blood
31	chr12:106620800-106622400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr12:106620800-106622400	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr12:106620800-106622400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr12:106620800-106623000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr12:106620800-106623200	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr12:106620800-106630400	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr12:106621000-106621800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr12:106621000-106621800	Enhancers	Muscle Satellite Cultured Cells	--
39	chr12:106621000-106621800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr12:106621000-106621800	Enhancers	Esophagus	oesophagus
41	chr12:106621000-106621800	Enhancers	Fetal Thymus	thymus
42	chr12:106621000-106621800	Enhancers	Gastric	stomach
43	chr12:106621000-106621800	Enhancers	Spleen	Spleen
44	chr12:106621000-106621800	Enhancers	HSMMtube	muscle
45	chr12:106621000-106622000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr12:106621000-106625000	Weak transcription	Left Ventricle	heart
47	chr12:106621200-106621800	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr12:106621200-106621800	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr12:106621200-106621800	Enhancers	GM12878-XiMat	blood
50	chr12:106621200-106632000	Weak transcription	Brain Hippocampus Middle	brain

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