Variant report

Variant	rs150794764
Chromosome Location	chr4:76949439-76949440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr4:76949317-76949720	K562	blood:	n/a	chr4:76949549-76949563 chr4:76949513-76949527 chr4:76949547-76949567 chr4:76949547-76949560 chr4:76949547-76949561 chr4:76949514-76949528 chr4:76949515-76949528 chr4:76949548-76949561 chr4:76949517-76949531 chr4:76949517-76949527 chr4:76949541-76949561 chr4:76949515-76949528 chr4:76949515-76949528 chr4:76949548-76949561 chr4:76949548-76949562 chr4:76949545-76949559 chr4:76949514-76949531 chr4:76949546-76949560 chr4:76949517-76949528
2	IRF1	chr4:76949346-76949703	K562	blood:	n/a	chr4:76949549-76949563 chr4:76949513-76949527 chr4:76949547-76949567 chr4:76949547-76949560 chr4:76949547-76949561 chr4:76949514-76949528 chr4:76949515-76949528 chr4:76949548-76949561 chr4:76949517-76949531 chr4:76949517-76949527 chr4:76949541-76949561 chr4:76949515-76949528 chr4:76949515-76949528 chr4:76949548-76949561 chr4:76949548-76949562 chr4:76949545-76949559 chr4:76949514-76949531 chr4:76949546-76949560 chr4:76949517-76949528
3	NFIC	chr4:76949323-76949820	SK-N-SH	brain:	n/a	chr4:76949592-76949609 chr4:76949593-76949609

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76944817..76946865-chr4:76946950..76949448,2	MCF-7	breast:
2	chr4:76946437..76948310-chr4:76949313..76951131,2	MCF-7	breast:

Variant related genes	Relation type
CXCL10	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv3342370	chr4:76947428-76950226	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2427313	chr4:76947776-76949452	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3430656	chr4:76947878-76950076	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv19222	chr4:76948569-76977780	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv1821339	chr4:76948817-76955927	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv1802071	chr4:76948817-76972594	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76944800-76949600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr4:76945200-76949600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr4:76945400-76949600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr4:76945600-76949600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr4:76945800-76949600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr4:76946000-76949600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr4:76949200-76949600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr4:76949200-76949600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
9	chr4:76949200-76949600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr4:76949200-76949600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:76949200-76949600	Active TSS	Duodenum Mucosa	Duodenum
12	chr4:76949200-76949600	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr4:76949200-76949800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:76949200-76949800	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr4:76949200-76950000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:76949200-76950000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:76949200-76950000	Active TSS	Stomach Smooth Muscle	stomach
18	chr4:76949200-76950000	Flanking Active TSS	HUVEC	blood vessel
19	chr4:76949200-76950200	Enhancers	Primary B cells from peripheral blood	blood
20	chr4:76949200-76950200	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr4:76949400-76949600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:76949400-76949600	Active TSS	Primary T cells from cord blood	blood
23	chr4:76949400-76949600	Enhancers	Primary hematopoietic stem cells	blood
24	chr4:76949400-76949600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:76949400-76949600	Active TSS	Liver	Liver
26	chr4:76949400-76949600	Enhancers	Brain Angular Gyrus	brain
27	chr4:76949400-76949600	Active TSS	Brain Substantia Nigra	brain
28	chr4:76949400-76949600	Active TSS	Fetal Stomach	stomach
29	chr4:76949400-76949600	Active TSS	Rectal Smooth Muscle	rectum
30	chr4:76949400-76949600	Flanking Active TSS	HMEC	breast
31	chr4:76949400-76949600	Active TSS	NHEK	skin
32	chr4:76949400-76949600	Active TSS	NHLF	lung
33	chr4:76949400-76949800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr4:76949400-76949800	Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr4:76949400-76949800	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr4:76949400-76949800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr4:76949400-76949800	Active TSS	Adipose Nuclei	Adipose
38	chr4:76949400-76949800	Active TSS	Brain Anterior Caudate	brain
39	chr4:76949400-76949800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr4:76949400-76949800	Active TSS	Colon Smooth Muscle	Colon
41	chr4:76949400-76949800	Active TSS	Ovary	ovary
42	chr4:76949400-76949800	Active TSS	Right Atrium	heart
43	chr4:76949400-76949800	Active TSS	Right Ventricle	heart
44	chr4:76949400-76949800	Active TSS	Stomach Mucosa	stomach
45	chr4:76949400-76949800	Active TSS	NHDF-Ad	bronchial
46	chr4:76949400-76950000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
47	chr4:76949400-76950000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr4:76949400-76950000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr4:76949400-76950000	Active TSS	Brain Cingulate Gyrus	brain
50	chr4:76949400-76950000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links