Variant report

Variant	rs150804334
Chromosome Location	chr9:103235033-103235034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr9:103234693-103235208	K562	blood:	n/a	n/a
2	ZBTB7A	chr9:103234996-103236749	ECC-1	luminal epithelium:	n/a	n/a
3	MAX	chr9:103234910-103235453	ECC-1	luminal epithelium:	n/a	n/a
4	MAX	chr9:103234906-103235421	A549	lung:	n/a	n/a
5	POLR2A	chr9:103235026-103237160	H1-hESC	embryonic stem cell:	n/a	n/a
6	USF2	chr9:103234774-103235483	H1-hESC	embryonic stem cell:	n/a	n/a
7	CTCF	chr9:103235000-103235150	NHDF-neo	bronchial:	n/a	n/a
8	CTCF	chr9:103235000-103235150	HCM	heart:	n/a	n/a
9	MAX	chr9:103234993-103236528	HepG2	liver:	n/a	chr9:103235778-103235788 chr9:103236482-103236497
10	E2F6	chr9:103234881-103235475	H1-hESC	embryonic stem cell:	n/a	chr9:103235201-103235212
11	MAX	chr9:103234973-103235401	NB4	blood:	n/a	n/a
12	NRF1	chr9:103234909-103236049	SK-N-SH	brain:	n/a	chr9:103235263-103235272 chr9:103235421-103235430
13	CTCF	chr9:103234940-103235090	HMEC	breast:	n/a	n/a
14	MYC	chr9:103234920-103235370	NB4	blood:	n/a	n/a
15	REST	chr9:103234842-103237848	H1-neurons	neurons:	n/a	chr9:103235650-103235663 chr9:103235342-103235352 chr9:103235674-103235687 chr9:103235709-103235722 chr9:103235355-103235368 chr9:103235779-103235792 chr9:103236454-103236467
16	POLR2A	chr9:103234868-103237304	H1-neurons	neurons:	n/a	n/a
17	RCOR1	chr9:103234552-103236193	K562	blood:	n/a	n/a
18	E2F6	chr9:103235016-103235929	K562	blood:	n/a	chr9:103235201-103235212 chr9:103235800-103235812
19	SIN3A	chr9:103234799-103237492	H1-hESC	embryonic stem cell:	n/a	chr9:103235709-103235722 chr9:103236454-103236465 chr9:103235650-103235663 chr9:103236454-103236467 chr9:103237260-103237273
20	MAX	chr9:103234852-103235323	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr9:103234881-103237349	H1-hESC	embryonic stem cell:	n/a	n/a
22	JUND	chr9:103234792-103235436	H1-hESC	embryonic stem cell:	n/a	chr9:103235362-103235371
23	E2F6	chr9:103235029-103235340	K562	blood:	n/a	chr9:103235201-103235212
24	MAX	chr9:103234881-103235515	K562	blood:	n/a	n/a
25	CTCF	chr9:103234896-103235460	K562	blood:	n/a	chr9:103235384-103235397
26	RCOR1	chr9:103235005-103235196	HepG2	liver:	n/a	n/a
27	E2F6	chr9:103234661-103236229	K562	blood:	n/a	chr9:103235201-103235212 chr9:103235800-103235812
28	EP300	chr9:103234591-103235113	K562	blood:	n/a	n/a
29	E2F6	chr9:103234661-103235484	H1-hESC	embryonic stem cell:	n/a	chr9:103235201-103235212
30	POLR2A	chr9:103234964-103235510	SK-N-MC	brain:	n/a	n/a
31	MYC	chr9:103234888-103235622	H1-hESC	embryonic stem cell:	n/a	n/a
32	MAX	chr9:103234839-103235649	H1-hESC	embryonic stem cell:	n/a	n/a
33	MAX	chr9:103235012-103235332	K562	blood:	n/a	n/a
34	CBX3	chr9:103234980-103235360	K562	blood:	n/a	n/a
35	POLR2A	chr9:103234952-103236715	Raji	blood:	n/a	n/a
36	ATF2	chr9:103234876-103235291	H1-hESC	embryonic stem cell:	n/a	n/a
37	ZBTB7A	chr9:103234943-103236824	ECC-1	luminal epithelium:	n/a	n/a
38	POLR2A	chr9:103234672-103236498	H1-hESC	embryonic stem cell:	n/a	n/a
39	MAX	chr9:103234918-103235684	H1-hESC	embryonic stem cell:	n/a	n/a
40	EP300	chr9:103234946-103235544	H1-hESC	embryonic stem cell:	n/a	chr9:103235349-103235365 chr9:103235259-103235268 chr9:103235382-103235398
41	MAZ	chr9:103234598-103236961	IMR90	lung:	n/a	chr9:103235778-103235788 chr9:103236482-103236497
42	CTCF	chr9:103234940-103235090	GM12873	blood:	n/a	n/a
43	CREB1	chr9:103234982-103235681	H1-hESC	embryonic stem cell:	n/a	n/a
44	ZBTB7A	chr9:103235026-103235478	K562	blood:	n/a	n/a
45	TAF7	chr9:103235017-103235507	H1-hESC	embryonic stem cell:	n/a	n/a
46	RAD21	chr9:103235012-103235503	H1-hESC	embryonic stem cell:	n/a	n/a
47	MAX	chr9:103234885-103235460	ECC-1	luminal epithelium:	n/a	n/a
48	POLR2A	chr9:103234870-103237548	H1-hESC	embryonic stem cell:	n/a	n/a
49	E2F4	chr9:103234944-103235122	MCF10A-Er-Src	breast:	n/a	n/a
50	CTCF	chr9:103235000-103235150	HMEC	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:103187999..103190908-chr9:103233595..103236918,6	MCF-7	breast:
2	chr9:103188255..103190992-chr9:103234182..103236159,2	MCF-7	breast:
3	chr9:103113352..103115792-chr9:103234740..103236804,2	K562	blood:

Variant related genes	Relation type
TMEFF1	TF binding region
ENSG00000066697	Chromatin interaction
ENSG00000136891	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv614955	chr9:103181596-103261227	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv3348068	chr9:103234431-103236904	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3376333	chr9:103234756-103237304	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103232200-103235400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:103234600-103235200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr9:103234600-103235200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr9:103234600-103235200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr9:103234600-103235200	Flanking Active TSS	K562	blood
6	chr9:103234600-103235400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:103234600-103236600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:103234600-103237400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr9:103234600-103237400	Active TSS	Fetal Kidney	kidney
10	chr9:103234800-103235200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
11	chr9:103234800-103235200	Flanking Active TSS	H9 Cell Line	embryonic stem cell
12	chr9:103234800-103235200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:103234800-103235200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:103234800-103235200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr9:103234800-103235200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
16	chr9:103234800-103235200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
17	chr9:103234800-103235200	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr9:103234800-103235200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:103234800-103235200	Flanking Active TSS	Brain Anterior Caudate	brain
20	chr9:103234800-103235200	Flanking Active TSS	Brain Hippocampus Middle	brain
21	chr9:103234800-103235200	Flanking Active TSS	Colon Smooth Muscle	Colon
22	chr9:103234800-103235200	Enhancers	Fetal Heart	heart
23	chr9:103234800-103235400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:103234800-103235800	Active TSS	Cortex derived primary cultured neurospheres	brain
25	chr9:103234800-103235800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr9:103234800-103235800	Enhancers	Placenta	Placenta
27	chr9:103234800-103235800	Active TSS	Fetal Stomach	stomach
28	chr9:103234800-103236400	Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr9:103234800-103236400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr9:103234800-103236400	Bivalent/Poised TSS	Thymus	Thymus
31	chr9:103234800-103236600	Active TSS	Primary T cells from cord blood	blood
32	chr9:103234800-103236600	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr9:103234800-103236600	Active TSS	NH-A	brain
34	chr9:103234800-103237000	Active TSS	Brain Cingulate Gyrus	brain
35	chr9:103234800-103237400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr9:103234800-103237400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr9:103234800-103237400	Active TSS	Brain Germinal Matrix	brain
38	chr9:103235000-103235200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr9:103235000-103235200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
40	chr9:103235000-103235200	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
41	chr9:103235000-103235200	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
42	chr9:103235000-103235200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
43	chr9:103235000-103235200	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
44	chr9:103235000-103235200	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 1	blood
45	chr9:103235000-103235200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
46	chr9:103235000-103235200	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
47	chr9:103235000-103235200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
48	chr9:103235000-103235200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
49	chr9:103235000-103235200	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
50	chr9:103235000-103235200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links