Variant report

Variant	rs150808419
Chromosome Location	chr15:78665556-78665557
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78639700..78642597-chr15:78664957..78668413,4	MCF-7	breast:
2	chr15:78638585..78642502-chr15:78665475..78668779,6	MCF-7	breast:
3	chr15:78661420..78663666-chr15:78664906..78666439,2	MCF-7	breast:
4	chr15:78658425..78660009-chr15:78663062..78665725,3	K562	blood:
5	chr15:78630690..78632557-chr15:78664334..78666586,2	K562	blood:

Variant related genes	Relation type
ENSG00000166426	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1052910	chr15:78608637-78707049	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv3434764	chr15:78665097-78667245	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78651600-78666600	Weak transcription	Pancreas	Pancrea
2	chr15:78661200-78667200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr15:78661400-78666400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:78664000-78665600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:78664600-78665600	Enhancers	Stomach Mucosa	stomach
6	chr15:78664800-78665800	Enhancers	A549	lung
7	chr15:78664800-78668000	Enhancers	Liver	Liver
8	chr15:78664800-78668200	Enhancers	Fetal Intestine Small	intestine
9	chr15:78665000-78665600	Enhancers	Duodenum Mucosa	Duodenum
10	chr15:78665000-78665600	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr15:78665000-78665600	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr15:78665000-78666800	Enhancers	HepG2	liver
13	chr15:78665000-78668200	Enhancers	Fetal Intestine Large	intestine
14	chr15:78665200-78665800	Enhancers	Hela-S3	cervix
15	chr15:78665200-78667200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:78665400-78666400	Weak transcription	Colonic Mucosa	Colon
17	chr15:78665400-78666400	Weak transcription	Gastric	stomach
18	chr15:78665400-78666600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr15:78665400-78666800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:78665400-78667400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr15:78665400-78673600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr15:78665400-78673600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr15:78665400-78681400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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