Variant report

Variant	rs150808968
Chromosome Location	chr10:118765516-118765517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr10:118763725-118765569	HEK293-T-REx	kidney:	n/a	chr10:118764720-118764729 chr10:118764709-118764730
2	POLR2A	chr10:118763901-118765557	MCF-7	breast:	n/a	n/a
3	POLR2A	chr10:118763959-118765525	K562	blood:	n/a	n/a
4	POLR2A	chr10:118765207-118765519	A549	lung:	n/a	n/a
5	TAL1	chr10:118764294-118765530	K562	blood:	n/a	n/a
6	ESR1	chr10:118765169-118765621	ECC-1	luminal epithelium:	n/a	chr10:118765431-118765446 chr10:118765430-118765447 chr10:118765378-118765393
7	MAX	chr10:118763653-118765765	A549	lung:	n/a	chr10:118765306-118765322 chr10:118765332-118765339
8	NFIC	chr10:118763787-118765767	ECC-1	luminal epithelium:	n/a	n/a
9	UBTF	chr10:118764042-118765595	K562	blood:	n/a	n/a
10	E2F6	chr10:118765010-118765598	H1-hESC	embryonic stem cell:	n/a	chr10:118765439-118765449 chr10:118765120-118765127 chr10:118765116-118765130 chr10:118765120-118765127 chr10:118765138-118765147 chr10:118765120-118765127
11	POLR2A	chr10:118763920-118765633	ECC-1	luminal epithelium:	n/a	n/a
12	POLR2A	chr10:118764020-118765538	HepG2	liver:	n/a	n/a
13	MAX	chr10:118763980-118765683	HepG2	liver:	n/a	chr10:118765306-118765322 chr10:118765332-118765339
14	MAX	chr10:118765114-118765532	H1-hESC	embryonic stem cell:	n/a	chr10:118765306-118765322 chr10:118765332-118765339
15	CREB1	chr10:118764010-118765603	HepG2	liver:	n/a	n/a
16	POLR2A	chr10:118763919-118765711	HCT-116	colon:	n/a	n/a
17	TCF12	chr10:118763750-118765684	ECC-1	luminal epithelium:	n/a	chr10:118764507-118764514
18	POLR2A	chr10:118763603-118765568	Hela-S3	cervix:	n/a	n/a
19	TEAD4	chr10:118763684-118765767	ECC-1	luminal epithelium:	n/a	n/a
20	KAP1	chr10:118765086-118765523	U2OS	brain:	n/a	n/a
21	MAX	chr10:118763821-118765607	MCF-7	breast:	n/a	chr10:118765306-118765322 chr10:118765332-118765339
22	POLR2A	chr10:118763972-118765582	K562	blood:	n/a	n/a
23	JUND	chr10:118764030-118765660	K562	blood:	n/a	chr10:118764805-118764814 chr10:118764800-118764809
24	ZBTB7A	chr10:118763987-118765616	ECC-1	luminal epithelium:	n/a	chr10:118765137-118765146
25	SMARCB1	chr10:118763976-118765609	Hela-S3	cervix:	n/a	n/a
26	YY1	chr10:118764098-118765554	ECC-1	luminal epithelium:	n/a	chr10:118764418-118764429
27	TCF12	chr10:118763864-118765812	ECC-1	luminal epithelium:	n/a	chr10:118764507-118764514
28	MAX	chr10:118764124-118765551	H1-hESC	embryonic stem cell:	n/a	chr10:118765306-118765322 chr10:118765332-118765339
29	MAFK	chr10:118765141-118765662	K562	blood:	n/a	n/a
30	E2F6	chr10:118763924-118765643	H1-hESC	embryonic stem cell:	n/a	chr10:118764591-118764599 chr10:118765439-118765449 chr10:118764591-118764598 chr10:118765120-118765127 chr10:118764591-118764599 chr10:118765116-118765130 chr10:118765120-118765127 chr10:118764494-118764504 chr10:118765138-118765147 chr10:118765120-118765127
31	MAX	chr10:118763615-118765878	HCT-116	colon:	n/a	chr10:118765306-118765322 chr10:118765332-118765339
32	BHLHE40	chr10:118763839-118765559	K562	blood:	n/a	chr10:118764791-118764807 chr10:118764487-118764503
33	CEBPB	chr10:118764148-118765548	HepG2	liver:	n/a	chr10:118765145-118765156
34	MAX	chr10:118763750-118765641	K562	blood:	n/a	chr10:118765306-118765322 chr10:118765332-118765339
35	MAX	chr10:118763875-118765548	K562	blood:	n/a	chr10:118765306-118765322 chr10:118765332-118765339
36	MYC	chr10:118763645-118765573	A549	lung:	n/a	chr10:118765306-118765322 chr10:118765332-118765339
37	TCF12	chr10:118763913-118765797	A549	lung:	n/a	chr10:118764507-118764514
38	MYC	chr10:118765164-118765558	MCF-7	breast:	n/a	chr10:118765306-118765322 chr10:118765332-118765339
39	POLR2A	chr10:118764169-118765531	HCT-116	colon:	n/a	n/a
40	HDAC2	chr10:118765169-118765517	HepG2	liver:	n/a	n/a
41	MAX	chr10:118764085-118765590	H1-hESC	embryonic stem cell:	n/a	chr10:118765306-118765322 chr10:118765332-118765339
42	TEAD4	chr10:118763926-118765683	ECC-1	luminal epithelium:	n/a	n/a
43	TCF7L2	chr10:118764040-118765612	HCT-116	colon:	n/a	chr10:118765566-118765573
44	ZEB1	chr10:118763958-118765602	HepG2	liver:	n/a	n/a
45	CEBPB	chr10:118763919-118765543	Hela-S3	cervix:	n/a	chr10:118765145-118765156
46	MAX	chr10:118763749-118765737	A549	lung:	n/a	chr10:118765306-118765322 chr10:118765332-118765339
47	E2F6	chr10:118763713-118765586	K562	blood:	n/a	chr10:118764591-118764599 chr10:118765439-118765449 chr10:118764591-118764598 chr10:118765120-118765127 chr10:118764591-118764599 chr10:118765116-118765130 chr10:118765120-118765127 chr10:118764494-118764504 chr10:118765138-118765147 chr10:118765120-118765127
48	BHLHE40	chr10:118764074-118765558	HepG2	liver:	n/a	chr10:118764791-118764807 chr10:118764487-118764503
49	MYC	chr10:118763783-118765578	K562	blood:	n/a	chr10:118765306-118765322 chr10:118765332-118765339
50	POLR2A	chr10:118764023-118765579	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118765114..118768175-chr10:118770999..118774519,3	K562	blood:
2	chr10:118718724..118721628-chr10:118764683..118766816,3	MCF-7	breast:

Variant related genes	Relation type
KIAA1598	TF binding region
ENSG00000187164	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755506	chr10:118748764-118800107	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	esv3525989	chr10:118764562-118770560	Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	n/a
3	esv3525990	chr10:118765187-118770410	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a
4	esv3525991	chr10:118765187-118770410	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118761400-118765600	Active TSS	Brain Angular Gyrus	brain
2	chr10:118763400-118766200	Active TSS	A549	lung
3	chr10:118763600-118765600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:118763600-118765600	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr10:118763600-118766200	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr10:118763800-118765600	Active TSS	H9 Cell Line	embryonic stem cell
7	chr10:118763800-118765600	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:118763800-118765600	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr10:118763800-118765600	Active TSS	HSMM	muscle
10	chr10:118764000-118765600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
11	chr10:118764000-118765600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:118764000-118765600	Active TSS	Fetal Brain Female	brain
13	chr10:118764200-118765600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
14	chr10:118764200-118765600	Active TSS	Muscle Satellite Cultured Cells	--
15	chr10:118764600-118765600	Bivalent/Poised TSS	Primary hematopoietic stem cells short term culture	blood
16	chr10:118764600-118765600	Flanking Active TSS	Spleen	Spleen
17	chr10:118764800-118765600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
18	chr10:118764800-118765600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
19	chr10:118764800-118765600	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr10:118764800-118765600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr10:118765000-118765600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:118765000-118765600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr10:118765000-118765600	Bivalent Enhancer	Primary B cells from cord blood	blood
24	chr10:118765000-118765600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:118765000-118765600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:118765000-118765600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr10:118765000-118765600	Flanking Active TSS	Liver	Liver
28	chr10:118765000-118765600	Flanking Active TSS	Duodenum Mucosa	Duodenum
29	chr10:118765000-118765600	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
30	chr10:118765000-118765600	Flanking Active TSS	Fetal Intestine Small	intestine
31	chr10:118765000-118765600	Flanking Active TSS	HUVEC	blood vessel
32	chr10:118765000-118765600	Flanking Active TSS	NH-A	brain
33	chr10:118765200-118765600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
34	chr10:118765200-118765600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr10:118765200-118765600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:118765200-118765600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr10:118765200-118765600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
38	chr10:118765200-118765600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
39	chr10:118765200-118765600	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr10:118765200-118765600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
41	chr10:118765200-118765600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
42	chr10:118765200-118765600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:118765200-118765600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr10:118765200-118765600	Flanking Active TSS	Brain Anterior Caudate	brain
45	chr10:118765200-118765600	Flanking Active TSS	Brain Cingulate Gyrus	brain
46	chr10:118765200-118765600	Flanking Active TSS	Brain Germinal Matrix	brain
47	chr10:118765200-118765600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
48	chr10:118765200-118765600	Flanking Active TSS	Brain Substantia Nigra	brain
49	chr10:118765200-118765600	Flanking Active TSS	Fetal Brain Male	brain
50	chr10:118765200-118765600	Flanking Active TSS	Fetal Intestine Large	intestine

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