Variant report

Variant	rs150810989
Chromosome Location	chr3:17372973-17372974
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17361833..17364009-chr3:17372023..17373697,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv869378	chr3:17338236-17576692	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv999568	chr3:17360261-17594750	Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv428080	chr3:17367870-17539943	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv876592	chr3:17369313-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv2755442	chr3:17372796-17589896	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17298800-17373000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:17330800-17381400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:17333400-17376000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:17339400-17442200	Weak transcription	Fetal Intestine Small	intestine
5	chr3:17344400-17439000	Weak transcription	Aorta	Aorta
6	chr3:17352000-17377600	Weak transcription	Dnd41	blood
7	chr3:17354800-17381600	Weak transcription	Ovary	ovary
8	chr3:17356200-17412800	Weak transcription	Left Ventricle	heart
9	chr3:17356800-17390000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr3:17358000-17377600	Weak transcription	Adipose Nuclei	Adipose
11	chr3:17362000-17376200	Weak transcription	Fetal Kidney	kidney
12	chr3:17362800-17382200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr3:17364600-17387600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr3:17364800-17375400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr3:17364800-17381800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr3:17365000-17377800	Weak transcription	Fetal Heart	heart
17	chr3:17365200-17383400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:17365400-17390000	Weak transcription	GM12878-XiMat	blood
19	chr3:17365600-17374200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:17365600-17377200	Weak transcription	Primary T cells from cord blood	blood
21	chr3:17365600-17413000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr3:17368400-17381600	Weak transcription	Psoas Muscle	Psoas
23	chr3:17368400-17384200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:17370000-17406200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr3:17370800-17411000	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr3:17372400-17410600	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr3:17372800-17374200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:17372800-17375800	Strong transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links