Variant report

Variant	rs150828508
Chromosome Location	chr3:94655540-94655541
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr3:94654596-94655577	MCF-7	breast:	n/a	n/a
2	FOSL2	chr3:94655041-94655567	MCF-7	breast:	n/a	chr3:94655520-94655534 chr3:94655320-94655330
3	GATA3	chr3:94654617-94655585	MCF-7	breast:	n/a	n/a
4	SIN3AK20	chr3:94654450-94655668	MCF-7	breast:	n/a	n/a
5	NR2F2	chr3:94654655-94655611	MCF-7	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:94655498-94655548	HAEpiC	amniotic membrane:	n/a
2	chr3:94655498-94655548	HNPCEpiC	eye:	n/a
3	chr3:94655498-94655548	ProgFib	skin:	n/a
4	chr3:94655498-94655548	H1-hESC	embryonic stem cell:	embryo
5	chr3:94655498-94655548	CMK	blood:	n/a
6	chr3:94655498-94655548	Hepatocyte	liver:	n/a
7	chr3:94655498-94655548	PrEC	prostate:	n/a
8	chr3:94655498-94655548	NB4	blood:	n/a
9	chr3:94655498-94655548	SK-N-SH	brain:	n/a
10	chr3:94655498-94655548	PFSK-1	brain:	n/a
11	chr3:94655498-94655548	AG04449	skin:	fetal
12	chr3:94655498-94655548	K562	blood:	n/a
13	chr3:94655498-94655548	ovcar-3	ovarian:	n/a
14	chr3:94655498-94655548	HL-60	blood:	n/a
15	chr3:94655498-94655548	HEK293	kidney:	embryo
16	chr3:94655498-94655548	HCPEpiC	choroid plexus:	n/a
17	chr3:94655498-94655548	GM19239	blood:	n/a
18	chr3:94655498-94655548	SKMC	muscle:	n/a
19	chr3:94655498-94655548	AG04450	lung:	fetal
20	chr3:94655498-94655548	HRCEpiC	kidney:	n/a
21	chr3:94655498-94655548	NH-A	brain:	n/a
22	chr3:94655498-94655548	HEEpiC	esophagus:	n/a
23	chr3:94655498-94655548	HIPEpiC	eye:	n/a
24	chr3:94655498-94655548	BJ	skin:	n/a
25	chr3:94655498-94655548	HMEC	breast:	n/a
26	chr3:94655498-94655548	NHDF-neo	bronchial:	n/a
27	chr3:94655498-94655548	HPAEpiC	pulmonary alveolar:	n/a
28	chr3:94655498-94655548	AG10803	skin:	n/a
29	chr3:94655498-94655548	A549	lung:	n/a
30	chr3:94655498-94655548	RPTEC	kidney:	n/a
31	chr3:94655498-94655548	ECC-1	luminal epithelium:	n/a
32	chr3:94655498-94655548	HRPEpiC	eye:	n/a
33	chr3:94655498-94655548	IMR90	lung:	fetal
34	chr3:94655498-94655548	SK-N-SH_RA	brain:	n/a
35	chr3:94655498-94655548	GM12892	blood:	n/a
36	chr3:94655498-94655548	MCF-7	breast:	n/a
37	chr3:94655498-94655548	LNCaP	prostate:	n/a
38	chr3:94655498-94655548	BE2_C	brain:	n/a
39	chr3:94655498-94655548	Jurkat	blood:	n/a
40	chr3:94655498-94655548	AoSMC	blood vessel:	n/a
41	chr3:94655498-94655548	HCT-116	colon:	n/a
42	chr3:94655498-94655548	MCF10A-Er-Src	breast:	n/a
43	chr3:94655498-94655548	HRE	kidney:	n/a
44	chr3:94655498-94655548	HCF	heart:	n/a
45	chr3:94655498-94655548	SAEC	small airway:	n/a
46	chr3:94655498-94655548	GM12891	blood:	n/a
47	chr3:94655498-94655548	HCM	heart:	n/a
48	chr3:94655498-94655548	PANC-1	pancreas:	n/a
49	chr3:94655498-94655548	T-47D	breast:	n/a
50	chr3:94655498-94655548	GM06990	blood:	n/a

No data

Variant related genes	Relation type
ENSG00000242911	TF binding region
LINC00879	TF binding region
LINC00879	CpG island
ENSG00000242911	CpG island

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965188	chr3:94655270-94656575	Active TSS Enhancers Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94654400-94655600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:94654600-94655600	Enhancers	Hela-S3	cervix
3	chr3:94654800-94655600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr3:94655400-94655600	Enhancers	K562	blood

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