Variant report

Variant	rs150882587
Chromosome Location	chr15:92936297-92936298
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:92936271-92938347	H1-hESC	embryonic stem cell:	n/a	n/a
2	SIN3A	chr15:92936277-92938776	H1-hESC	embryonic stem cell:	n/a	chr15:92936363-92936376 chr15:92936514-92936523 chr15:92938276-92938290 chr15:92938301-92938312 chr15:92937586-92937597 chr15:92936394-92936403
3	REST	chr15:92936233-92936537	H1-hESC	embryonic stem cell:	n/a	chr15:92936368-92936382 chr15:92936459-92936472 chr15:92936459-92936472
4	CTBP2	chr15:92936285-92937466	H1-hESC	embryonic stem cell:	n/a	n/a
5	REST	chr15:92936208-92936536	H1-hESC	embryonic stem cell:	n/a	chr15:92936368-92936382 chr15:92936459-92936472 chr15:92936459-92936472
6	POLR2A	chr15:92936281-92938278	H1-neurons	neurons:	n/a	n/a
7	POLR2A	chr15:92936218-92938920	H1-neurons	neurons:	n/a	n/a
8	GATA2	chr15:92936237-92936823	SH-SY5Y	brain:	n/a	n/a

Variant related genes	Relation type
ST8SIA2	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
5	esv3393959	chr15:92935948-92939196	Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92935000-92936400	Enhancers	Fetal Brain Male	brain
2	chr15:92935200-92936400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:92935200-92936400	Bivalent Enhancer	Fetal Thymus	thymus
4	chr15:92935400-92936400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr15:92935400-92936400	Bivalent Enhancer	Fetal Muscle Leg	muscle
6	chr15:92935400-92936600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:92935400-92936600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
8	chr15:92935400-92936600	Flanking Active TSS	Brain Germinal Matrix	brain
9	chr15:92935400-92938400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
10	chr15:92935400-92938800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr15:92935600-92936400	Bivalent Enhancer	Fetal Stomach	stomach
12	chr15:92935600-92936600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:92935600-92936600	Flanking Active TSS	Fetal Brain Female	brain
14	chr15:92935600-92936600	Bivalent Enhancer	NHDF-Ad	bronchial
15	chr15:92935600-92936800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
16	chr15:92935800-92936400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:92935800-92936400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:92935800-92936400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
19	chr15:92935800-92936800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
20	chr15:92935800-92936800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr15:92935800-92938800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
22	chr15:92936000-92936400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
23	chr15:92936000-92936400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:92936000-92936400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:92936000-92936400	Bivalent Enhancer	Fetal Lung	lung
26	chr15:92936000-92936400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
27	chr15:92936000-92936400	Enhancers	HSMMtube	muscle
28	chr15:92936200-92936400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:92936200-92936400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
30	chr15:92936200-92936400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr15:92936200-92936400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
32	chr15:92936200-92936600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
33	chr15:92936200-92936600	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:92936200-92936600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr15:92936200-92936600	Bivalent Enhancer	A549	lung
36	chr15:92936200-92936800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr15:92936200-92936800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr15:92936200-92936800	Enhancers	Fetal Heart	heart
39	chr15:92936200-92938600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
40	chr15:92936200-92939400	Active TSS	HSMM	muscle

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