Variant report

Variant	rs150911771
Chromosome Location	chr10:43698083-43698084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:43696369..43700743-chr10:43891529..43894634,3	K562	blood:
2	chr10:43696835..43700131-chr10:43902185..43905182,4	K562	blood:
3	chr10:43696064..43699246-chr10:43901638..43904576,3	K562	blood:
4	chr10:43632409..43636039-chr10:43698014..43700588,4	K562	blood:
5	chr10:43632694..43635237-chr10:43697053..43700182,3	MCF-7	breast:
6	chr10:43632409..43636039-chr10:43698014..43700588,6	K562	blood:
7	chr10:43682496..43684417-chr10:43696461..43698091,2	K562	blood:
8	chr10:43697420..43700683-chr10:43890424..43894292,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000273008	Chromatin interaction
ENSG00000169813	Chromatin interaction
ENSG00000169826	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv895082	chr10:43530071-43755506	Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv895083	chr10:43549708-43765485	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv916378	chr10:43622151-43868356	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	esv1831010	chr10:43674916-43759185	Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv895084	chr10:43688505-43765485	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv466881	chr10:43695049-43799588	Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv550696	chr10:43695049-43799588	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv895085	chr10:43695049-43804617	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	esv3402305	chr10:43697246-43699869	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43675600-43700600	Weak transcription	A549	lung
2	chr10:43697000-43698200	Enhancers	Spleen	Spleen
3	chr10:43697200-43698200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr10:43697200-43698400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:43697200-43699400	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr10:43697400-43698200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
7	chr10:43697400-43698200	Enhancers	Left Ventricle	heart
8	chr10:43697400-43698400	Flanking Active TSS	Primary B cells from peripheral blood	blood
9	chr10:43697400-43698400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr10:43697400-43698400	Active TSS	Rectal Smooth Muscle	rectum
11	chr10:43697400-43698400	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr10:43697400-43698800	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:43697400-43699400	Active TSS	H9 Cell Line	embryonic stem cell
14	chr10:43697400-43699400	Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr10:43697400-43699400	Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr10:43697600-43698200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:43697600-43698200	Active TSS	NHLF	lung
18	chr10:43697600-43698400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:43697600-43698400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
20	chr10:43697600-43698400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr10:43697600-43698400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:43697600-43698400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
23	chr10:43697600-43698400	Active TSS	Fetal Brain Female	brain
24	chr10:43697600-43698800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:43697600-43699000	Active TSS	Rectal Mucosa Donor 29	rectum
26	chr10:43697600-43699000	Active TSS	HUVEC	blood vessel
27	chr10:43697600-43699000	Active TSS	K562	blood
28	chr10:43697600-43699000	Active TSS	NHEK	skin
29	chr10:43697600-43699200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr10:43697600-43699400	Active TSS	ES-I3 Cell Line	embryonic stem cell
31	chr10:43697600-43699400	Active TSS	H1 Cell Line	embryonic stem cell
32	chr10:43697600-43699400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:43697600-43699400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr10:43697600-43699400	Active TSS	HUES64 Cell Line	embryonic stem cell
35	chr10:43697600-43699400	Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr10:43697600-43699400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr10:43697600-43699400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:43697800-43698200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:43697800-43698200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr10:43697800-43698200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
41	chr10:43697800-43698200	Active TSS	Aorta	Aorta
42	chr10:43697800-43698200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
43	chr10:43697800-43698200	Active TSS	Psoas Muscle	Psoas
44	chr10:43697800-43698200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
45	chr10:43697800-43698200	Flanking Active TSS	HMEC	breast
46	chr10:43697800-43698400	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr10:43697800-43698400	Flanking Active TSS	Pancreas	Pancrea
48	chr10:43697800-43698400	Enhancers	Stomach Mucosa	stomach
49	chr10:43697800-43698600	Active TSS	Duodenum Smooth Muscle	Duodenum
50	chr10:43697800-43699000	Active TSS	Pancreatic Islets	Pancreatic Islet

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