Variant report

Variant	rs1509911
Chromosome Location	chr7:80805175-80805176
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80546517..80551479-chr7:80801945..80805775,5	MCF-7	breast:
2	chr7:80546356..80552735-chr7:80798673..80805379,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075223	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1024547	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs1024548	0.81[CEU][hapmap]
rs11972689	0.81[CEU][hapmap]
rs11975948	0.80[EUR][1000 genomes]
rs11976314	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs11977048	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs11978732	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13236895	0.93[EUR][1000 genomes]
rs1397010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1509912	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs184480	0.87[EUR][1000 genomes]
rs327686	0.87[EUR][1000 genomes]
rs327693	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs327707	0.82[CEU][hapmap]
rs7778696	0.80[EUR][1000 genomes]
rs7794595	0.80[EUR][1000 genomes]
rs7797263	0.81[CEU][hapmap]
rs7797400	0.96[CEU][hapmap];0.88[YRI][hapmap];0.93[EUR][1000 genomes]
rs7810096	0.80[EUR][1000 genomes]
rs7810830	0.92[CEU][hapmap];0.86[YRI][hapmap];0.93[EUR][1000 genomes]
rs980966	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80803000-80805200	Enhancers	HSMM	muscle
2	chr7:80803000-80805600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:80803000-80805600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:80803000-80805600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:80803600-80805200	Weak transcription	Stomach Mucosa	stomach
6	chr7:80803600-80805400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:80803600-80810600	Weak transcription	HepG2	liver
8	chr7:80803800-80805200	Enhancers	NH-A	brain
9	chr7:80803800-80819800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:80804600-80805200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:80804600-80805400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:80804600-80805400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:80804600-80805400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr7:80804600-80805600	Enhancers	NHLF	lung
15	chr7:80804800-80805200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:80804800-80805200	Enhancers	Fetal Brain Female	brain
17	chr7:80804800-80805200	Flanking Active TSS	A549	lung
18	chr7:80804800-80805400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr7:80804800-80805400	Enhancers	Fetal Muscle Leg	muscle
20	chr7:80805000-80805200	Flanking Active TSS	Fetal Brain Male	brain
21	chr7:80805000-80805200	Enhancers	HMEC	breast
22	chr7:80805000-80805400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr7:80805000-80805400	Enhancers	HSMMtube	muscle
24	chr7:80805000-80819800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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