Variant report

Variant	rs1509948
Chromosome Location	chr4:94989890-94989891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10028391	0.91[ASN][1000 genomes]
rs10034470	0.91[ASN][1000 genomes]
rs12650492	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs166795	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs280056	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs280060	0.89[ASN][1000 genomes]
rs280061	0.89[ASN][1000 genomes]
rs280069	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs280070	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs280071	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs280072	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs280074	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs280075	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs280077	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs280079	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28678108	0.94[ASN][1000 genomes]
rs3906760	0.91[ASN][1000 genomes]
rs7659111	0.91[ASN][1000 genomes]
rs7661373	0.91[ASN][1000 genomes]
rs9993438	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008055	chr4:94169131-95030074	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv1792557	chr4:94738158-95027272	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv830010	chr4:94830239-95029403	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1002654	chr4:94867639-95030074	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv537187	chr4:94867639-95030074	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv879617	chr4:94980768-95055821	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv879618	chr4:94980768-95136164	Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv879619	chr4:94981478-95017242	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94988600-94990400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr4:94989400-94990600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:94989400-94990800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:94989400-94990800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:94989600-94990000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:94989800-94990200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr4:94989800-94990200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr4:94989800-94990400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr4:94989800-94990400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:94989800-94990400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr4:94989800-94990600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr4:94989800-94990600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:94989800-94990600	Enhancers	HUES6 Cell Line	embryonic stem cell

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