Variant report

Variant	rs151005116
Chromosome Location	chr11:8008938-8008939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr11:8008290-8008991	Hela-S3	cervix:	n/a	n/a
2	ELF1	chr11:8008254-8009064	GM12878	blood:	n/a	n/a
3	POLR2A	chr11:8008467-8009390	K562	blood:	n/a	n/a
4	MAX	chr11:8008468-8008992	Hela-S3	cervix:	n/a	chr11:8008813-8008824
5	YY1	chr11:8008389-8009133	K562	blood:	n/a	n/a
6	YY1	chr11:8008426-8009136	SK-N-SH_RA	brain:	n/a	n/a
7	POLR2A	chr11:8008769-8009251	MCF-7	breast:	n/a	n/a
8	ZNF263	chr11:8008180-8009282	HEK293-T-REx	kidney:	n/a	n/a
9	USF1	chr11:8008446-8009057	A549	lung:	n/a	n/a
10	POLR2A	chr11:8008814-8009073	A549	lung:	n/a	n/a
11	POLR2A	chr11:8008825-8009082	HepG2	liver:	n/a	n/a
12	EP300	chr11:8008421-8008965	H1-hESC	embryonic stem cell:	n/a	chr11:8008617-8008633
13	EP300	chr11:8008514-8009010	GM12878	blood:	n/a	chr11:8008617-8008633
14	POLR2A	chr11:8008695-8009118	GM12891	blood:	n/a	n/a
15	POLR2A	chr11:8008714-8009243	MCF-7	breast:	n/a	n/a
16	CHD2	chr11:8008364-8008952	K562	blood:	n/a	n/a
17	PML	chr11:8008513-8009110	K562	blood:	n/a	n/a
18	POLR2A	chr11:8008527-8009072	U87	brain:	n/a	n/a
19	JUND	chr11:8008428-8008966	A549	lung:	n/a	chr11:8008792-8008801
20	USF1	chr11:8008428-8009050	A549	lung:	n/a	n/a
21	POLR2A	chr11:8008434-8009097	HCT-116	colon:	n/a	n/a
22	SIN3AK20	chr11:8008821-8009054	K562	blood:	n/a	n/a
23	TAF1	chr11:8008715-8009061	GM12891	blood:	n/a	n/a
24	ELF1	chr11:8008513-8009035	HepG2	liver:	n/a	n/a
25	POLR2A	chr11:8008677-8009110	GM12891	blood:	n/a	n/a
26	JUN	chr11:8008155-8009030	K562	blood:	n/a	chr11:8008792-8008801
27	TAF1	chr11:8008785-8009251	HepG2	liver:	n/a	n/a
28	IRF3	chr11:8008451-8008984	Hela-S3	cervix:	n/a	chr11:8008790-8008799
29	CREB1	chr11:8008252-8009061	A549	lung:	n/a	n/a
30	FOXM1	chr11:8008315-8009094	ECC-1	luminal epithelium:	n/a	n/a
31	POLR2A	chr11:8008732-8009223	A549	lung:	n/a	n/a
32	MAZ	chr11:8008241-8009162	IMR90	lung:	n/a	chr11:8008813-8008824
33	NFIC	chr11:8008329-8009106	GM12878	blood:	n/a	n/a
34	RELA	chr11:8008442-8009033	GM10847	blood:	n/a	n/a
35	MYC	chr11:8008449-8009286	K562	blood:	n/a	chr11:8008813-8008824
36	HEY1	chr11:8008792-8009077	HepG2	liver:	n/a	n/a
37	USF2	chr11:8008501-8009011	H1-hESC	embryonic stem cell:	n/a	chr11:8008812-8008823
38	YY1	chr11:8008482-8009097	K562	blood:	n/a	n/a
39	SMC3	chr11:8007690-8009083	SK-N-SH	brain:	n/a	chr11:8008613-8008627
40	MAZ	chr11:8008293-8008982	Hela-S3	cervix:	n/a	chr11:8008813-8008824
41	STAT5A	chr11:8008291-8008948	GM12878	blood:	n/a	n/a
42	TAF1	chr11:8008521-8009073	GM12878	blood:	n/a	n/a
43	GABPA	chr11:8008346-8009068	SK-N-SH	brain:	n/a	n/a
44	EP300	chr11:8008367-8008957	ECC-1	luminal epithelium:	n/a	chr11:8008617-8008633
45	MTA3	chr11:8008428-8008939	GM12878	blood:	n/a	n/a
46	RELA	chr11:8008464-8008950	GM19099	blood:	n/a	n/a
47	CREB1	chr11:8008341-8009041	GM12878	blood:	n/a	n/a
48	TCF7L2	chr11:8008470-8008946	PANC-1	pancreas:	n/a	n/a
49	POLR2A	chr11:8008389-8009068	HUVEC	blood vessel:	n/a	n/a
50	NFYB	chr11:8008580-8008989	GM12878	blood:	n/a	chr11:8008787-8008799 chr11:8008788-8008803 chr11:8008788-8008802 chr11:8008790-8008800 chr11:8008785-8008800 chr11:8008790-8008800 chr11:8008788-8008801 chr11:8008788-8008803

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8008425..8011151-chr11:8011381..8013712,2	MCF-7	breast:

Variant related genes	Relation type
EIF3F	TF binding region
ENSG00000175390	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975248	chr11:8008767-8009772	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8007800-8009400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:8007800-8009400	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr11:8007800-8009600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:8007800-8009600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:8008000-8009400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:8008000-8009400	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr11:8008000-8009400	Active TSS	Stomach Smooth Muscle	stomach
8	chr11:8008000-8009600	Active TSS	Brain Germinal Matrix	brain
9	chr11:8008000-8009600	Active TSS	Brain Substantia Nigra	brain
10	chr11:8008000-8009800	Active TSS	A549	lung
11	chr11:8008000-8010000	Active TSS	Right Atrium	heart
12	chr11:8008000-8010400	Active TSS	Psoas Muscle	Psoas
13	chr11:8008200-8009400	Active TSS	Duodenum Mucosa	Duodenum
14	chr11:8008200-8009400	Active TSS	K562	blood
15	chr11:8008200-8009400	Active TSS	NH-A	brain
16	chr11:8008200-8009600	Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr11:8008200-8009600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:8008200-8009600	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr11:8008200-8009600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:8008200-8009600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:8008200-8009600	Active TSS	Colonic Mucosa	Colon
22	chr11:8008200-8009600	Active TSS	Esophagus	oesophagus
23	chr11:8008200-8009600	Active TSS	Fetal Heart	heart
24	chr11:8008200-8009600	Active TSS	Fetal Kidney	kidney
25	chr11:8008200-8009600	Active TSS	Fetal Lung	lung
26	chr11:8008200-8009600	Active TSS	Left Ventricle	heart
27	chr11:8008200-8009600	Active TSS	Right Ventricle	heart
28	chr11:8008200-8009800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
29	chr11:8008200-8009800	Active TSS	H1 Cell Line	embryonic stem cell
30	chr11:8008200-8009800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr11:8008200-8009800	Active TSS	H9 Cell Line	embryonic stem cell
32	chr11:8008200-8009800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:8008200-8010000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:8008200-8010000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr11:8008200-8010000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:8008200-8010000	Active TSS	Aorta	Aorta
37	chr11:8008200-8010000	Active TSS	Lung	lung
38	chr11:8008200-8010200	Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr11:8008200-8010200	Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr11:8008200-8010200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:8008400-8009200	Active TSS	Primary neutrophils fromperipheralblood	blood
42	chr11:8008400-8009200	Active TSS	Primary T cells from cord blood	blood
43	chr11:8008400-8009200	Active TSS	HepG2	liver
44	chr11:8008400-8009400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:8008400-8009400	Active TSS	Primary B cells from peripheral blood	blood
46	chr11:8008400-8009400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
47	chr11:8008400-8009400	Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr11:8008400-8009400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
49	chr11:8008400-8009400	Active TSS	Primary T killer memory cells from peripheral blood	blood
50	chr11:8008400-8009400	Active TSS	Cortex derived primary cultured neurospheres	brain

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