Variant report

Variant	rs151010410
Chromosome Location	chr7:55954411-55954412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr7:55954346-55955468	SK-N-SH	brain:	n/a	chr7:55954891-55954906

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:55953245..55956784-chr7:55957115..55962697,6	MCF-7	breast:

Variant related genes	Relation type
ZNF713	TF binding region
ENSG00000249773	TF binding region
ENSG00000265676	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829874	chr7:55382925-56369816	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv995105	chr7:55606107-56174888	Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	esv12412	chr7:55619800-56385412	Strong transcription Flanking Active TSS Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv427782	chr7:55703073-56010314	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv949574	chr7:55705566-56544711	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
6	nsv1019400	chr7:55709827-56094540	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	esv3446617	chr7:55745934-56485903	Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
8	nsv529162	chr7:55800753-56174888	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
9	esv2761334	chr7:55823581-56424739	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
10	nsv888064	chr7:55831721-56104539	Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
11	nsv1018806	chr7:55844931-56383936	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
12	nsv538860	chr7:55844931-56383936	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
13	nsv498114	chr7:55872850-56174888	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
14	esv3395123	chr7:55954408-55956456	Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:55952000-55954600	Weak transcription	Spleen	Spleen
2	chr7:55954400-55954600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:55954400-55954600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr7:55954400-55954600	Active TSS	Primary B cells from cord blood	blood
5	chr7:55954400-55954600	Enhancers	Primary B cells from peripheral blood	blood
6	chr7:55954400-55954600	Enhancers	Primary T cells fromperipheralblood	blood
7	chr7:55954400-55954600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr7:55954400-55954600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr7:55954400-55954600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr7:55954400-55954600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:55954400-55954600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
12	chr7:55954400-55954600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr7:55954400-55954600	Enhancers	Fetal Muscle Trunk	muscle
14	chr7:55954400-55954600	Enhancers	Placenta	Placenta
15	chr7:55954400-55954600	Active TSS	Dnd41	blood
16	chr7:55954400-55954600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr7:55954400-55955800	Active TSS	Primary T cells from cord blood	blood
18	chr7:55954400-55955800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:55954400-55955800	Active TSS	Fetal Brain Female	brain
20	chr7:55954400-55956000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:55954400-55956000	Active TSS	Brain Anterior Caudate	brain
22	chr7:55954400-55956000	Active TSS	Rectal Mucosa Donor 29	rectum
23	chr7:55954400-55956200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:55954400-55956200	Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr7:55954400-55956200	Active TSS	iPS-15b Cell Line	embryonic stem cell
26	chr7:55954400-55956200	Active TSS	iPS-18 Cell Line	embryonic stem cell
27	chr7:55954400-55956200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr7:55954400-55956200	Active TSS	Rectal Smooth Muscle	rectum
29	chr7:55954400-55956400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr7:55954400-55956400	Active TSS	A549	lung
31	chr7:55954400-55956600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr7:55954400-55956600	Active TSS	Brain Germinal Matrix	brain

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