Variant report

Variant	rs151033548
Chromosome Location	chr7:65499604-65499605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr7:65499512-65499832	SK-N-SH	brain:	n/a	n/a
2	RAD21	chr7:65499584-65499708	Hela-S3	cervix:	n/a	n/a
3	TBP	chr7:65499360-65499771	Hela-S3	cervix:	n/a	n/a
4	STAT3	chr7:65499385-65499733	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr7:65499367-65499938	SK-N-SH	brain:	n/a	n/a
6	PBX3	chr7:65499313-65499808	SK-N-SH	brain:	n/a	n/a
7	EP300	chr7:65499366-65499830	SK-N-SH	brain:	n/a	n/a
8	EP300	chr7:65499371-65499765	Hela-S3	cervix:	n/a	n/a
9	EP300	chr7:65498341-65499926	SK-N-SH_RA	brain:	n/a	chr7:65498552-65498566
10	POLR2A	chr7:65499522-65499873	SK-N-SH	brain:	n/a	n/a
11	GATA3	chr7:65498906-65499996	SK-N-SH	brain:	n/a	chr7:65499399-65499408 chr7:65499498-65499505 chr7:65498953-65498966
12	RAD21	chr7:65499392-65499847	SK-N-SH_RA	brain:	n/a	n/a
13	TCF12	chr7:65499199-65499816	SK-N-SH	brain:	n/a	chr7:65499334-65499343
14	TCF12	chr7:65498404-65500020	SK-N-SH	brain:	n/a	chr7:65499334-65499343
15	GATA3	chr7:65498451-65499768	SH-SY5Y	brain:	n/a	chr7:65499399-65499408 chr7:65499498-65499505 chr7:65498953-65498966
16	TEAD4	chr7:65499346-65499826	SK-N-SH	brain:	n/a	n/a
17	GATA3	chr7:65498842-65499818	SK-N-SH	brain:	n/a	chr7:65499399-65499408 chr7:65499498-65499505 chr7:65498953-65498966
18	GATA2	chr7:65498403-65499817	SH-SY5Y	brain:	n/a	chr7:65499399-65499408 chr7:65499498-65499505 chr7:65498953-65498966
19	NFIC	chr7:65498842-65499811	SK-N-SH	brain:	n/a	n/a
20	SMC3	chr7:65499511-65499714	Hela-S3	cervix:	n/a	n/a
21	RAD21	chr7:65499456-65499804	SK-N-SH_RA	brain:	n/a	n/a
22	EP300	chr7:65497163-65500235	SK-N-SH	brain:	n/a	chr7:65498552-65498566 chr7:65497304-65497318
23	CEBPB	chr7:65499495-65499857	Hela-S3	cervix:	n/a	n/a
24	PBX3	chr7:65499292-65499779	SK-N-SH	brain:	n/a	n/a
25	EP300	chr7:65498325-65500038	SK-N-SH_RA	brain:	n/a	chr7:65498552-65498566

Variant related genes	Relation type
ENSG00000229886	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761079	chr7:65092426-65689733	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
3	nsv1025494	chr7:65402301-65515606	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv538906	chr7:65402301-65515606	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv888325	chr7:65474919-65575893	Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1021186	chr7:65492601-65663438	Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	esv11866	chr7:65498683-65500497	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65492800-65502000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:65493400-65500000	Weak transcription	Lung	lung
3	chr7:65497400-65502200	Enhancers	Liver	Liver
4	chr7:65498400-65499800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:65498400-65499800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr7:65498400-65499800	Enhancers	HepG2	liver
7	chr7:65498400-65499800	Enhancers	NHDF-Ad	bronchial
8	chr7:65498400-65499800	Enhancers	NHLF	lung
9	chr7:65498400-65500000	Enhancers	Hela-S3	cervix
10	chr7:65499200-65500000	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr7:65499200-65500600	Enhancers	Fetal Lung	lung
12	chr7:65499200-65508200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:65499200-65508600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:65499600-65500200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:65499600-65508600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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