Variant report

Variant	rs151045775
Chromosome Location	chr9:117832089-117832090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:117832071-117835221	U87	brain:	n/a	n/a
2	POLR2A	chr9:117832077-117832819	U87	brain:	n/a	n/a
3	POLR2A	chr9:117831915-117832770	SK-N-MC	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117823464..117826063-chr9:117830552..117832982,2	MCF-7	breast:

Variant related genes	Relation type
TNC	TF binding region
ENSG00000041982	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831696	chr9:117701582-117874150	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv16595	chr9:117830951-117833948	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv20116	chr9:117831511-117832302	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117782400-117848200	Weak transcription	Brain Substantia Nigra	brain
2	chr9:117791600-117833200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:117802200-117848200	Weak transcription	Spleen	Spleen
4	chr9:117815400-117859200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:117817800-117850600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:117819800-117848000	Weak transcription	Fetal Intestine Small	intestine
7	chr9:117821400-117840200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr9:117822400-117854400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:117825400-117848000	Weak transcription	Lung	lung
10	chr9:117826000-117834200	Weak transcription	Fetal Kidney	kidney
11	chr9:117826400-117833600	Weak transcription	HSMMtube	muscle
12	chr9:117826400-117834400	Weak transcription	Esophagus	oesophagus
13	chr9:117826400-117835800	Weak transcription	Aorta	Aorta
14	chr9:117826600-117835600	Weak transcription	HMEC	breast
15	chr9:117826800-117849400	Strong transcription	Osteobl	bone
16	chr9:117827000-117834800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr9:117827000-117834800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:117827000-117848600	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr9:117827000-117849200	Strong transcription	NHDF-Ad	bronchial
20	chr9:117827200-117832400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:117827200-117832400	Weak transcription	NHEK	skin
22	chr9:117827200-117832600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr9:117827200-117834200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr9:117827200-117834400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr9:117827200-117835800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:117827200-117855200	Strong transcription	NH-A	brain
27	chr9:117827400-117832400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr9:117827400-117832600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr9:117827400-117832600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr9:117827400-117834400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:117827400-117849200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr9:117828000-117832400	Weak transcription	Fetal Stomach	stomach
33	chr9:117828000-117832600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr9:117828200-117832400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr9:117828200-117833800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr9:117828800-117833600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr9:117829400-117839200	Strong transcription	NHLF	lung
38	chr9:117829800-117838400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:117830200-117833400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:117830400-117832600	Genic enhancers	Colon Smooth Muscle	Colon
41	chr9:117830400-117840800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr9:117830800-117838600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr9:117831200-117832400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr9:117831400-117833600	Weak transcription	Fetal Muscle Leg	muscle
45	chr9:117831400-117834600	Weak transcription	Fetal Lung	lung
46	chr9:117831800-117832800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr9:117831800-117848000	Strong transcription	Stomach Smooth Muscle	stomach
48	chr9:117832000-117833800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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