Variant report

Variant	rs1510932
Chromosome Location	chr8:8692066-8692067
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:8690681..8693173-chr8:8702089..8703698,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10046783	0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs10046784	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs11995244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12679021	1.00[JPT][hapmap]
rs13254903	0.81[CHB][hapmap]
rs13259619	0.93[ASN][1000 genomes]
rs1510933	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1876836	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs2409089	1.00[CEU][hapmap]
rs2409095	0.89[CHB][hapmap];0.87[CHD][hapmap];0.89[JPT][hapmap]
rs3748144	0.81[CHD][hapmap]
rs3827809	0.88[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs408459	0.81[CHB][hapmap]
rs4840364	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs4841058	0.94[CHD][hapmap];1.00[JPT][hapmap]
rs6601265	0.81[CHB][hapmap]
rs7837620	0.88[JPT][hapmap]
rs9329169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1019606	chr8:8353661-8736992	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv539456	chr8:8353661-8736992	Strong transcription Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv995047	chr8:8353662-8857913	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1022511	chr8:8493992-8737132	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv539457	chr8:8493992-8737132	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	esv1824870	chr8:8583943-8699382	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	nsv831228	chr8:8608387-8790790	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv1018828	chr8:8609880-8790660	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv1022331	chr8:8610035-8787981	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
11	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
12	nsv890338	chr8:8669622-8707970	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1015437	chr8:8681255-8723798	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8667200-8699200	Weak transcription	Aorta	Aorta
2	chr8:8667200-8701600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr8:8667400-8693400	Weak transcription	Small Intestine	intestine
4	chr8:8667600-8701000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr8:8670000-8701200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:8670200-8701200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr8:8670400-8705400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr8:8670800-8692400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr8:8672000-8700200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr8:8674800-8701800	Weak transcription	Primary T cells from cord blood	blood
11	chr8:8675200-8699000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr8:8675800-8699800	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr8:8676200-8699400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr8:8678600-8694400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr8:8678800-8701600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr8:8679600-8701400	Weak transcription	A549	lung
17	chr8:8679600-8701600	Weak transcription	HepG2	liver
18	chr8:8680400-8700200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr8:8681800-8700000	Weak transcription	Fetal Thymus	thymus
20	chr8:8683200-8701400	Weak transcription	Fetal Intestine Small	intestine
21	chr8:8683800-8701000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr8:8684200-8700800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr8:8684600-8703800	Weak transcription	Dnd41	blood
24	chr8:8686400-8693600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr8:8686400-8694800	Weak transcription	Gastric	stomach
26	chr8:8686400-8700000	Weak transcription	Spleen	Spleen
27	chr8:8686400-8702000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr8:8686600-8694800	Weak transcription	Fetal Stomach	stomach
29	chr8:8686600-8705600	Weak transcription	Right Atrium	heart
30	chr8:8686800-8693800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr8:8686800-8700000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr8:8686800-8702400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr8:8687000-8701400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr8:8687400-8696000	Weak transcription	Fetal Brain Male	brain
35	chr8:8687600-8698600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr8:8687600-8706600	Weak transcription	Lung	lung
37	chr8:8687800-8698200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr8:8688200-8693600	Weak transcription	Fetal Lung	lung
39	chr8:8688600-8693400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr8:8688600-8698200	Weak transcription	Right Ventricle	heart
41	chr8:8689000-8698200	Weak transcription	Colon Smooth Muscle	Colon
42	chr8:8690600-8693000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr8:8691200-8692200	Enhancers	HMEC	breast
44	chr8:8691400-8692200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr8:8691400-8692400	Enhancers	Muscle Satellite Cultured Cells	--
46	chr8:8691400-8692600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr8:8691400-8694400	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr8:8691600-8692400	Enhancers	HUVEC	blood vessel
49	chr8:8691600-8692400	Enhancers	Osteobl	bone
50	chr8:8691600-8692800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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