Variant report

Variant	rs151098375
Chromosome Location	chr6:35463354-35463355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35265003..35267090-chr6:35463346..35464932,2	K562	blood:
2	chr6:35310116..35312027-chr6:35462385..35465150,2	MCF-7	breast:
3	chr6:35462442..35464169-chr6:35698121..35700196,2	MCF-7	breast:
4	chr6:35310114..35311915-chr6:35462651..35465491,3	MCF-7	breast:
5	chr6:35462682..35465009-chr6:35702407..35705389,2	K562	blood:
6	chr6:35418643..35423313-chr6:35462563..35468017,10	K562	blood:
7	chr6:35263661..35265616-chr6:35463054..35466039,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000023892	Chromatin interaction
ENSG00000112039	Chromatin interaction
ENSG00000157343	Chromatin interaction
ENSG00000112033	Chromatin interaction
ENSG00000232909	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
2	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
3	nsv984463	chr6:35432948-35477634	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	67 gene(s)	inside rSNPs	diseases
4	nsv602911	chr6:35457396-35465483	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
5	esv1843819	chr6:35457396-35465749	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
6	esv1851060	chr6:35457396-35465749	Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
7	esv1794339	chr6:35457396-35465786	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
8	esv1800978	chr6:35457396-35465786	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
9	esv1803037	chr6:35457396-35465786	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
10	esv1837448	chr6:35457396-35465786	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
11	nsv462909	chr6:35457396-35502202	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
12	nsv602912	chr6:35457396-35502202	Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
13	nsv602913	chr6:35457842-35465422	Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
14	esv3384067	chr6:35462874-35466272	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
15	nsv602914	chr6:35463202-35465109	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35455400-35463400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:35456200-35464400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr6:35457200-35463400	Enhancers	Lung	lung
4	chr6:35457200-35463600	Enhancers	Pancreas	Pancrea
5	chr6:35458400-35463400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:35458400-35463800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:35458400-35463800	Weak transcription	Brain Angular Gyrus	brain
8	chr6:35458600-35463400	Weak transcription	Brain Substantia Nigra	brain
9	chr6:35458600-35463400	Enhancers	Left Ventricle	heart
10	chr6:35458600-35463800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:35458800-35463400	Enhancers	Right Atrium	heart
12	chr6:35458800-35463600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:35458800-35463600	Weak transcription	Brain Anterior Caudate	brain
14	chr6:35458800-35463800	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:35460000-35463600	Weak transcription	A549	lung
16	chr6:35460400-35463600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
17	chr6:35460600-35463400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:35460600-35463800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
19	chr6:35460800-35463400	Weak transcription	K562	blood
20	chr6:35461000-35465000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr6:35461000-35465000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr6:35461200-35463400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:35461200-35463400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr6:35461200-35463800	Bivalent Enhancer	Fetal Thymus	thymus
25	chr6:35461600-35463400	Enhancers	Primary T cells fromperipheralblood	blood
26	chr6:35461600-35463400	Enhancers	Adipose Nuclei	Adipose
27	chr6:35461600-35463400	Enhancers	Gastric	stomach
28	chr6:35461600-35463600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
29	chr6:35461600-35464000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
30	chr6:35461800-35463400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:35462000-35463600	Flanking Active TSS	Placenta	Placenta
32	chr6:35462000-35463600	Flanking Active TSS	HepG2	liver
33	chr6:35462000-35464000	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr6:35462000-35464000	Flanking Active TSS	HSMM	muscle
35	chr6:35462200-35463400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:35462200-35463600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:35462200-35463800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:35462400-35463400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr6:35462400-35463400	Enhancers	Aorta	Aorta
40	chr6:35462400-35464400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr6:35462600-35463400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr6:35462600-35463600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:35462600-35463600	Flanking Active TSS	Colon Smooth Muscle	Colon
44	chr6:35462600-35464000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:35462800-35463400	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
46	chr6:35462800-35463600	Flanking Active TSS	Placenta Amnion	Placenta Amnion
47	chr6:35462800-35463800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:35462800-35463800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:35462800-35464000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
50	chr6:35463000-35463400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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