Variant report

Variant	rs1511078
Chromosome Location	chr6:165283309-165283310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1511063	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4107735	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4394186	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6904570	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6931505	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6937304	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9347937	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9347938	0.85[EUR][1000 genomes]
rs9365796	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9365798	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9365799	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605232	chr6:164994771-165401154	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830862	chr6:165132822-165311086	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv521153	chr6:165279393-165343557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165282800-165283400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:165283000-165283400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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