Variant report

Variant	rs151143180
Chromosome Location	chr16:80871199-80871200
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD2	chr16:80871088-80872288	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr16:80870845-80872356	Hela-S3	cervix:	n/a	n/a
3	EP300	chr16:80870003-80872168	Hela-S3	cervix:	n/a	chr16:80871157-80871170 chr16:80871612-80871626 chr16:80871613-80871627
4	RFX5	chr16:80870847-80872367	Hela-S3	cervix:	n/a	chr16:80871252-80871266
5	MYC	chr16:80870664-80872118	Hela-S3	cervix:	n/a	n/a
6	POLR2A	chr16:80870345-80872594	Hela-S3	cervix:	n/a	n/a
7	GTF2F1	chr16:80870188-80872239	Hela-S3	cervix:	n/a	n/a
8	TCF7L2	chr16:80871163-80871828	HEK293	kidney:	n/a	n/a
9	NR2F2	chr16:80870676-80871300	MCF-7	breast:	n/a	n/a
10	STAT3	chr16:80870785-80872196	Hela-S3	cervix:	n/a	chr16:80871539-80871547 chr16:80871329-80871337
11	SMC3	chr16:80870876-80872234	Hela-S3	cervix:	n/a	chr16:80871793-80871803
12	MAX	chr16:80870740-80872191	Hela-S3	cervix:	n/a	n/a
13	RAD21	chr16:80870801-80872254	Hela-S3	cervix:	n/a	n/a
14	TCF7L2	chr16:80870644-80872246	Hela-S3	cervix:	n/a	n/a
15	JUND	chr16:80870730-80872067	Hela-S3	cervix:	n/a	n/a
16	BRCA1	chr16:80870805-80872128	Hela-S3	cervix:	n/a	n/a
17	NFYB	chr16:80871109-80872089	Hela-S3	cervix:	n/a	n/a
18	NFYA	chr16:80871101-80872214	Hela-S3	cervix:	n/a	n/a
19	CEBPB	chr16:80870107-80872211	Hela-S3	cervix:	n/a	chr16:80871547-80871559
20	TCF12	chr16:80871172-80872220	MCF-7	breast:	n/a	chr16:80872106-80872113
21	RCOR1	chr16:80870755-80872249	Hela-S3	cervix:	n/a	n/a
22	POLR2A	chr16:80870644-80872386	Hela-S3	cervix:	n/a	n/a
23	TBP	chr16:80870103-80872176	Hela-S3	cervix:	n/a	n/a
24	MAX	chr16:80869976-80872277	Hela-S3	cervix:	n/a	n/a
25	MAFK	chr16:80870870-80872111	Hela-S3	cervix:	n/a	chr16:80871504-80871515

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80836730..80839628-chr16:80867393..80871297,3	MCF-7	breast:
2	chr16:80837354..80839278-chr16:80870353..80872624,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260896	TF binding region
ENSG00000166446	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	esv3451298	chr16:80696935-80997389	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	esv3350075	chr16:80696955-80997359	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv542990	chr16:80729797-80918198	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv833301	chr16:80732170-80928751	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv948534	chr16:80867635-81160492	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
8	esv2761922	chr16:80871113-80892858	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80870200-80871400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr16:80870200-80871600	Enhancers	HUVEC	blood vessel
3	chr16:80870200-80872800	Enhancers	Placenta	Placenta
4	chr16:80870400-80872000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr16:80870600-80871200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr16:80870600-80871800	Enhancers	Fetal Intestine Large	intestine
7	chr16:80870800-80871200	Enhancers	Adipose Nuclei	Adipose
8	chr16:80870800-80871400	Enhancers	Fetal Intestine Small	intestine
9	chr16:80870800-80872000	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr16:80870800-80872200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr16:80871000-80871400	Flanking Active TSS	Hela-S3	cervix

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