Variant report

Variant	rs151159854
Chromosome Location	chr3:98250569-98250570
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYA	chr3:98250547-98250836	GM12878	blood:	n/a	chr3:98250655-98250665
2	MTA3	chr3:98249535-98254032	GM12878	blood:	n/a	n/a
3	POLR2A	chr3:98248620-98252823	GM12892	blood:	n/a	n/a
4	MAX	chr3:98250540-98252422	GM12878	blood:	n/a	n/a
5	SP1	chr3:98250494-98250887	GM12878	blood:	n/a	n/a
6	STAT5A	chr3:98250364-98253431	GM12878	blood:	n/a	n/a
7	STAT3	chr3:98250158-98251060	GM12878	blood:	n/a	n/a
8	POLR2A	chr3:98248655-98253486	GM15510	blood:	n/a	n/a
9	RCOR1	chr3:98250097-98251228	GM12878	blood:	n/a	n/a
10	POLR2A	chr3:98249565-98253944	GM18951	blood:	n/a	n/a
11	POLR2A	chr3:98248658-98256543	GM18505	blood:	n/a	n/a
12	ZNF143	chr3:98250537-98251111	GM12878	blood:	n/a	n/a
13	PML	chr3:98250389-98251596	GM12878	blood:	n/a	n/a
14	POU2F2	chr3:98250355-98252461	GM12878	blood:	n/a	chr3:98250619-98250629 chr3:98250616-98250630 chr3:98250619-98250629 chr3:98250618-98250628 chr3:98250618-98250630 chr3:98250612-98250634 chr3:98250617-98250630 chr3:98250620-98250627 chr3:98250616-98250631 chr3:98250619-98250628
15	CEBPB	chr3:98250202-98252695	GM12878	blood:	n/a	n/a
16	MTA3	chr3:98250511-98252779	GM12878	blood:	n/a	n/a
17	MXI1	chr3:98250141-98251489	GM12878	blood:	n/a	n/a
18	FOXM1	chr3:98250317-98251952	GM12878	blood:	n/a	n/a
19	NFIC	chr3:98250335-98251055	GM12878	blood:	n/a	chr3:98250610-98250638
20	POU2F2	chr3:98250493-98251272	GM12878	blood:	n/a	chr3:98250619-98250629 chr3:98250616-98250630 chr3:98250619-98250629 chr3:98250618-98250628 chr3:98250618-98250630 chr3:98250612-98250634 chr3:98250617-98250630 chr3:98250620-98250627 chr3:98250616-98250631 chr3:98250619-98250628
21	EP300	chr3:98250381-98251108	GM12878	blood:	n/a	chr3:98250388-98250398 chr3:98250509-98250523
22	RUNX3	chr3:98250052-98252812	GM12878	blood:	n/a	chr3:98250633-98250642 chr3:98250633-98250642
23	MAZ	chr3:98249802-98252037	GM12878	blood:	n/a	n/a
24	IRF3	chr3:98250207-98250753	GM12878	blood:	n/a	chr3:98250513-98250522 chr3:98250514-98250524
25	POLR2A	chr3:98249459-98253009	GM12891	blood:	n/a	n/a
26	POLR2A	chr3:98248619-98253488	GM12892	blood:	n/a	n/a
27	IKZF1	chr3:98250535-98251319	GM12878	blood:	n/a	n/a
28	RUNX3	chr3:98250085-98251091	GM12878	blood:	n/a	chr3:98250633-98250642 chr3:98250633-98250642
29	POLR2A	chr3:98248683-98253982	GM19099	blood:	n/a	n/a
30	FOXM1	chr3:98250006-98252764	GM12878	blood:	n/a	n/a
31	BCLAF1	chr3:98250486-98252802	GM12878	blood:	n/a	chr3:98250514-98250523
32	TAF1	chr3:98250497-98251388	GM12878	blood:	n/a	n/a
33	PML	chr3:98245909-98254043	GM12878	blood:	n/a	chr3:98253390-98253398
34	POLR2A	chr3:98248613-98253578	GM12892	blood:	n/a	n/a
35	POLR2A	chr3:98248690-98256144	GM19193	blood:	n/a	n/a
36	POLR2A	chr3:98248444-98256619	GM12878	blood:	n/a	n/a
37	NFATC1	chr3:98248840-98253424	GM12878	blood:	n/a	n/a
38	POLR2A	chr3:98249471-98252678	GM12891	blood:	n/a	n/a
39	POU2F2	chr3:98250504-98250778	GM12891	blood:	n/a	chr3:98250619-98250629 chr3:98250616-98250630 chr3:98250619-98250629 chr3:98250618-98250628 chr3:98250618-98250630 chr3:98250612-98250634 chr3:98250617-98250630 chr3:98250620-98250627 chr3:98250616-98250631 chr3:98250619-98250628
40	TBL1XR1	chr3:98250056-98252476	GM12878	blood:	n/a	n/a
41	ZNF384	chr3:98250269-98250964	GM12878	blood:	n/a	chr3:98250520-98250528
42	CREB1	chr3:98250264-98252480	GM12878	blood:	n/a	n/a
43	POLR2A	chr3:98250511-98252699	GM12878	blood:	n/a	n/a
44	ATF2	chr3:98249967-98252577	GM12878	blood:	n/a	n/a
45	POU2F2	chr3:98250448-98252089	GM12891	blood:	n/a	chr3:98250619-98250629 chr3:98250616-98250630 chr3:98250619-98250629 chr3:98250618-98250628 chr3:98250618-98250630 chr3:98250612-98250634 chr3:98250617-98250630 chr3:98250620-98250627 chr3:98250616-98250631 chr3:98250619-98250628
46	NFYB	chr3:98250305-98251033	GM12878	blood:	n/a	chr3:98250655-98250665
47	POLR2A	chr3:98248626-98253505	GM12878	blood:	n/a	n/a
48	POLR2A	chr3:98248630-98254033	GM12878	blood:	n/a	n/a
49	NFATC1	chr3:98248493-98253590	GM12878	blood:	n/a	n/a
50	POLR2A	chr3:98250563-98252571	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
GPR15	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528056	chr3:98101101-98317836	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv520503	chr3:98102801-98317836	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv834774	chr3:98108423-98274064	Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv834775	chr3:98170059-98367552	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv3390386	chr3:98174549-98579953	Genic enhancers Strong transcription Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv236502	chr3:98250046-98254624	Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98242200-98250800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:98249200-98250800	Active TSS	GM12878-XiMat	blood
3	chr3:98249200-98250800	Weak transcription	K562	blood
4	chr3:98249200-98251200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:98250200-98250600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:98250200-98256200	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr3:98250400-98251400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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