Variant report

Variant	rs1511708
Chromosome Location	chr8:115023668-115023669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:115023596..115026093-chr8:115027615..115029686,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10088993	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10089805	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10090151	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10090734	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10091091	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10092620	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10092930	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10094289	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10096083	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10100392	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10103880	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10105336	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10106977	0.91[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs10107178	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10108066	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10108202	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10109234	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10109418	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10109768	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10109903	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10110854	0.96[EUR][1000 genomes]
rs10111253	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10112615	0.96[EUR][1000 genomes]
rs10113371	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11776894	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11777088	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs11783672	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12155938	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12334521	0.89[EUR][1000 genomes]
rs12335057	0.85[EUR][1000 genomes]
rs12375298	0.94[EUR][1000 genomes]
rs2221836	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28395468	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs28404904	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs28431909	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs28482027	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs28533162	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs28579960	0.96[EUR][1000 genomes]
rs28609759	0.84[EUR][1000 genomes]
rs28687261	0.96[EUR][1000 genomes]
rs28698733	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs4607652	0.89[EUR][1000 genomes]
rs58686599	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs60007462	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62540735	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62540750	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62540751	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62540756	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62540757	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62540758	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62540759	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62542860	0.89[EUR][1000 genomes]
rs62542861	0.89[EUR][1000 genomes]
rs62542862	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs67621740	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6980966	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6998035	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7005966	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7016049	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7018251	0.89[EUR][1000 genomes]
rs7840223	0.86[EUR][1000 genomes]
rs9283948	0.91[AFR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv818650	chr8:114574863-115477600	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2758168	chr8:114575703-115321957	Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2759636	chr8:114575703-115321957	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv891340	chr8:114828429-115445405	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv429933	chr8:114863824-115049824	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2757286	chr8:114885432-115211172	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv429934	chr8:114933824-115146824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv891345	chr8:114956591-115118818	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv891346	chr8:114983288-115027676	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:115023400-115023800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr8:115023600-115023800	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links