Variant report
| Variant | rs1511901 |
|---|---|
| Chromosome Location | chr3:68553025-68553026 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:68548311..68550713-chr3:68552898..68555029,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:42)
| rs_ID | r2[population] |
|---|---|
| rs1355528 | 0.89[EUR][1000 genomes] |
| rs1398066 | 0.92[EUR][1000 genomes] |
| rs1511893 | 0.90[EUR][1000 genomes] |
| rs1511894 | 0.90[EUR][1000 genomes] |
| rs1511895 | 0.90[EUR][1000 genomes] |
| rs1511896 | 0.90[EUR][1000 genomes] |
| rs1511902 | 0.92[EUR][1000 genomes] |
| rs1511903 | 0.92[EUR][1000 genomes] |
| rs1511904 | 0.92[EUR][1000 genomes] |
| rs1606243 | 0.92[EUR][1000 genomes] |
| rs1849228 | 0.92[EUR][1000 genomes] |
| rs1849229 | 0.92[EUR][1000 genomes] |
| rs1849230 | 0.92[EUR][1000 genomes] |
| rs1849231 | 0.90[EUR][1000 genomes] |
| rs1849232 | 0.90[EUR][1000 genomes] |
| rs1849236 | 0.92[EUR][1000 genomes] |
| rs1858375 | 0.80[EUR][1000 genomes] |
| rs1858376 | 0.89[EUR][1000 genomes] |
| rs1858377 | 0.89[EUR][1000 genomes] |
| rs1912855 | 0.89[EUR][1000 genomes] |
| rs2137181 | 0.80[EUR][1000 genomes] |
| rs2665530 | 0.80[EUR][1000 genomes] |
| rs2665531 | 0.90[EUR][1000 genomes] |
| rs2665532 | 0.90[EUR][1000 genomes] |
| rs2665533 | 0.90[EUR][1000 genomes] |
| rs2665535 | 0.90[EUR][1000 genomes] |
| rs2665536 | 0.92[EUR][1000 genomes] |
| rs2665537 | 0.92[EUR][1000 genomes] |
| rs2665538 | 0.92[EUR][1000 genomes] |
| rs2665551 | 0.82[CEU][hapmap] |
| rs2668156 | 0.90[CEU][hapmap] |
| rs2668158 | 0.90[CEU][hapmap] |
| rs2668159 | 0.86[CEU][hapmap] |
| rs2668161 | 0.92[EUR][1000 genomes] |
| rs2668162 | 0.92[EUR][1000 genomes] |
| rs2668163 | 0.90[EUR][1000 genomes] |
| rs2668165 | 0.90[EUR][1000 genomes] |
| rs2668166 | 0.90[EUR][1000 genomes] |
| rs2668167 | 0.90[EUR][1000 genomes] |
| rs2668168 | 0.89[EUR][1000 genomes] |
| rs2668169 | 0.90[EUR][1000 genomes] |
| rs2668170 | 0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1832396 | chr3:68478762-68641509 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv876929 | chr3:68508137-68565824 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:68552600-68554000 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
