Variant report

Variant	rs1512328
Chromosome Location	chr4:149330018-149330019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10009023	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10434100	0.91[JPT][hapmap]
rs10519963	0.91[JPT][hapmap]
rs11722067	1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11732490	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1398268	0.87[YRI][hapmap]
rs1398269	1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1512326	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1512335	0.91[JPT][hapmap]
rs1877445	0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1913023	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2048547	0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2063553	0.88[JPT][hapmap]
rs2063555	0.91[JPT][hapmap]
rs2063556	0.82[JPT][hapmap]
rs2137330	0.91[JPT][hapmap]
rs61764777	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6825048	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7686433	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149297800-149350000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:149307600-149336600	Weak transcription	Aorta	Aorta
3	chr4:149312800-149338800	Weak transcription	Brain Hippocampus Middle	brain
4	chr4:149318800-149346600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:149319000-149339000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr4:149319200-149335000	Weak transcription	Esophagus	oesophagus
7	chr4:149319200-149339200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:149319400-149334600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr4:149320400-149351800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:149325800-149338600	Weak transcription	Brain Angular Gyrus	brain
11	chr4:149326800-149334600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr4:149327000-149351000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr4:149327200-149332800	Weak transcription	Right Ventricle	heart
14	chr4:149327200-149333200	Weak transcription	Ovary	ovary
15	chr4:149327200-149341200	Weak transcription	Psoas Muscle	Psoas
16	chr4:149327200-149341800	Weak transcription	Right Atrium	heart
17	chr4:149327400-149333200	Weak transcription	Left Ventricle	heart
18	chr4:149327400-149346600	Weak transcription	Small Intestine	intestine
19	chr4:149327800-149335200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr4:149327800-149346400	Weak transcription	Gastric	stomach
21	chr4:149327800-149346400	Weak transcription	Pancreas	Pancrea
22	chr4:149328400-149335200	Weak transcription	Liver	Liver
23	chr4:149328600-149337600	Weak transcription	Stomach Mucosa	stomach
24	chr4:149329200-149332200	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr4:149329400-149331000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr4:149329600-149343800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr4:149330000-149330400	Enhancers	Adipose Nuclei	Adipose

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