Variant report

Variant	rs151247721
Chromosome Location	chr9:95896238-95896239
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95870960..95873239-chr9:95894940..95897821,4	MCF-7	breast:
2	chr9:95895042..95899051-chr9:95945154..95949540,5	MCF-7	breast:
3	chr9:95818120..95822805-chr9:95894646..95898384,4	K562	blood:
4	chr15:96874474..96876437-chr9:95895214..95896846,2	MCF-7	breast:
5	chr9:95525332..95528852-chr9:95893539..95896445,3	MCF-7	breast:
6	chr9:95893830..95897202-chr9:96212872..96217148,4	MCF-7	breast:
7	chr9:95856253..95862485-chr9:95892353..95899486,12	MCF-7	breast:
8	chr9:95733025..95737240-chr9:95894074..95898257,5	MCF-7	breast:
9	chr9:95895341..95897817-chr9:99179220..99181040,2	MCF-7	breast:
10	chr9:95895047..95897771-chr9:96069097..96071737,2	MCF-7	breast:
11	chr9:95895154..95898000-chr9:96338001..96340609,3	MCF-7	breast:
12	chr3:67704924..67705468-chr9:95896136..95896742,2	NB4	blood:
13	chr9:95819594..95823966-chr9:95894549..95897415,5	MCF-7	breast:
14	chr9:95894765..95898074-chr9:96066261..96068998,4	MCF-7	breast:
15	chr9:95894803..95898160-chr9:96337820..96340366,3	MCF-7	breast:
16	chr9:95894917..95896473-chr9:96212218..96213888,2	MCF-7	breast:
17	chr9:95895534..95897628-chr9:96214404..96216660,2	MCF-7	breast:
18	chr9:95855662..95862507-chr9:95894736..95899302,16	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction
ENSG00000165233	Chromatin interaction
ENSG00000185551	Chromatin interaction
ENSG00000241316	Chromatin interaction
ENSG00000127084	Chromatin interaction
ENSG00000165238	Chromatin interaction
ENSG00000172340	Chromatin interaction
ENSG00000223446	Chromatin interaction
ENSG00000048828	Chromatin interaction
ENSG00000157303	Chromatin interaction
ENSG00000188938	Chromatin interaction
ENSG00000165244	Chromatin interaction
ENSG00000185963	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	esv1824329	chr9:95811604-95921347	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv893579	chr9:95855100-95923091	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv893581	chr9:95872216-95930334	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv614879	chr9:95883363-95897564	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
9	nsv824982	chr9:95895045-95897753	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95890400-95896600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
2	chr9:95893800-95896400	Flanking Active TSS	Primary B cells from cord blood	blood
3	chr9:95894800-95897200	Active TSS	Aorta	Aorta
4	chr9:95895000-95896400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:95895000-95897200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:95895000-95897400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
7	chr9:95895200-95897000	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr9:95895200-95897200	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr9:95895400-95896800	Active TSS	Fetal Brain Female	brain
10	chr9:95895400-95897000	Active TSS	H9 Cell Line	embryonic stem cell
11	chr9:95895400-95897000	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr9:95895400-95897000	Active TSS	Right Atrium	heart
13	chr9:95895400-95897200	Active TSS	Fetal Kidney	kidney
14	chr9:95895600-95896600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:95895600-95896800	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr9:95895600-95896800	Active TSS	Sigmoid Colon	Sigmoid Colon
17	chr9:95895600-95897000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
18	chr9:95895600-95897000	Active TSS	Primary T helper naive cells from peripheral blood	blood
19	chr9:95895600-95897000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr9:95895600-95897000	Active TSS	Colon Smooth Muscle	Colon
21	chr9:95895600-95897000	Active TSS	Ovary	ovary
22	chr9:95895600-95897000	Active TSS	A549	lung
23	chr9:95895600-95897200	Active TSS	Gastric	stomach
24	chr9:95895800-95896400	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
25	chr9:95895800-95896800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr9:95895800-95896800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:95895800-95896800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:95895800-95896800	Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr9:95895800-95896800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
30	chr9:95895800-95896800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr9:95895800-95896800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
32	chr9:95895800-95896800	Active TSS	Liver	Liver
33	chr9:95895800-95896800	Active TSS	Brain Anterior Caudate	brain
34	chr9:95895800-95896800	Active TSS	Brain Inferior Temporal Lobe	brain
35	chr9:95895800-95896800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr9:95895800-95896800	Active TSS	Esophagus	oesophagus
37	chr9:95895800-95896800	Active TSS	Fetal Intestine Small	intestine
38	chr9:95895800-95896800	Active TSS	Right Ventricle	heart
39	chr9:95895800-95896800	Active TSS	Small Intestine	intestine
40	chr9:95895800-95896800	Active TSS	Monocytes-CD14+_RO01746	blood
41	chr9:95895800-95897000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:95895800-95897000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr9:95895800-95897000	Active TSS	HUES6 Cell Line	embryonic stem cell
44	chr9:95895800-95897000	Active TSS	HUES64 Cell Line	embryonic stem cell
45	chr9:95895800-95897000	Active TSS	iPS-18 Cell Line	embryonic stem cell
46	chr9:95895800-95897000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr9:95895800-95897000	Active TSS	Breast Myoepithelial Primary Cells	Breast
48	chr9:95895800-95897000	Active TSS	Primary monocytes fromperipheralblood	blood
49	chr9:95895800-95897000	Active TSS	Primary T cells from cord blood	blood
50	chr9:95895800-95897000	Active TSS	Brain Angular Gyrus	brain

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