Variant report

Variant	rs151331398
Chromosome Location	chr11:120079746-120079747
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr11:120079535-120079888	MCF10A-Er-Src	breast:	n/a	chr11:120079699-120079710 chr11:120079699-120079711 chr11:120079702-120079713 chr11:120079701-120079709 chr11:120079699-120079710
2	MAX	chr11:120079542-120079863	HepG2	liver:	n/a	chr11:120079701-120079710
3	EGR1	chr11:120079503-120079759	K562	blood:	n/a	n/a
4	MYC	chr11:120079593-120079802	HepG2	liver:	n/a	chr11:120079701-120079710
5	FOS	chr11:120079589-120079831	MCF10A-Er-Src	breast:	n/a	chr11:120079699-120079710 chr11:120079699-120079711 chr11:120079702-120079713 chr11:120079701-120079709 chr11:120079699-120079710
6	CEBPB	chr11:120079487-120079867	IMR90	lung:	n/a	chr11:120079660-120079673
7	EGR1	chr11:120079566-120079754	K562	blood:	n/a	n/a
8	POLR2A	chr11:120079661-120079861	HepG2	liver:	n/a	n/a
9	MAFK	chr11:120079582-120079775	HepG2	liver:	n/a	n/a
10	FOS	chr11:120079470-120079892	MCF10A-Er-Src	breast:	n/a	chr11:120079699-120079710 chr11:120079699-120079711 chr11:120079702-120079713 chr11:120079701-120079709 chr11:120079699-120079710
11	MYC	chr11:120079674-120079804	Hela-S3	cervix:	n/a	chr11:120079701-120079710
12	POLR2A	chr11:120079651-120079882	MCF10A-Er-Src	breast:	n/a	n/a
13	FOSL2	chr11:120079463-120079916	HepG2	liver:	n/a	chr11:120079699-120079710 chr11:120079699-120079711 chr11:120079702-120079713 chr11:120079701-120079709 chr11:120079700-120079711
14	STAT3	chr11:120079589-120079798	MCF10A-Er-Src	breast:	n/a	n/a
15	JUND	chr11:120079506-120079849	HepG2	liver:	n/a	chr11:120079699-120079710 chr11:120079699-120079711 chr11:120079702-120079713 chr11:120079701-120079709 chr11:120079699-120079710
16	MYC	chr11:120078285-120079942	NB4	blood:	n/a	chr11:120079701-120079710
17	MYC	chr11:120079574-120079868	MCF10A-Er-Src	breast:	n/a	chr11:120079701-120079710
18	POLR2A	chr11:120079492-120079756	Hela-S3	cervix:	n/a	n/a
19	RCOR1	chr11:120079528-120079806	Hela-S3	cervix:	n/a	n/a
20	JUND	chr11:120079498-120079853	K562	blood:	n/a	chr11:120079699-120079710 chr11:120079699-120079711 chr11:120079702-120079713 chr11:120079701-120079709 chr11:120079699-120079710
21	MYC	chr11:120079569-120079927	MCF10A-Er-Src	breast:	n/a	chr11:120079701-120079710
22	FOSL2	chr11:120079472-120079913	HepG2	liver:	n/a	chr11:120079699-120079710 chr11:120079699-120079711 chr11:120079702-120079713 chr11:120079701-120079709 chr11:120079700-120079711
23	EP300	chr11:120079405-120079944	HepG2	liver:	n/a	chr11:120079431-120079440
24	ARID3A	chr11:120078747-120079772	HepG2	liver:	n/a	n/a
25	MAX	chr11:120079501-120079896	Hela-S3	cervix:	n/a	chr11:120079701-120079710
26	RCOR1	chr11:120079445-120079878	HepG2	liver:	n/a	n/a
27	CEBPB	chr11:120079488-120079815	HepG2	liver:	n/a	chr11:120079660-120079673
28	MAFF	chr11:120079572-120079788	HepG2	liver:	n/a	n/a
29	MAX	chr11:120078322-120079958	NB4	blood:	n/a	chr11:120079701-120079710
30	POLR2A	chr11:120079496-120079869	Hela-S3	cervix:	n/a	n/a
31	MAX	chr11:120079558-120079901	K562	blood:	n/a	chr11:120079701-120079710
32	TBP	chr11:120079687-120079831	HepG2	liver:	n/a	n/a
33	MAZ	chr11:120079595-120079852	HepG2	liver:	n/a	chr11:120079701-120079710
34	FOS	chr11:120079456-120079891	HUVEC	blood vessel:	n/a	chr11:120079699-120079710 chr11:120079699-120079711 chr11:120079702-120079713 chr11:120079701-120079709 chr11:120079699-120079710
35	USF2	chr11:120079579-120079910	Hela-S3	cervix:	n/a	n/a
36	FOS	chr11:120079512-120079857	MCF10A-Er-Src	breast:	n/a	chr11:120079699-120079710 chr11:120079699-120079711 chr11:120079702-120079713 chr11:120079701-120079709 chr11:120079699-120079710
37	E2F6	chr11:120079643-120079755	K562	blood:	n/a	n/a
38	TBP	chr11:120079519-120079857	Hela-S3	cervix:	n/a	n/a
39	SMC3	chr11:120079512-120079866	Hela-S3	cervix:	n/a	chr11:120079625-120079632
40	MXI1	chr11:120079202-120080018	IMR90	lung:	n/a	n/a
41	MYC	chr11:120079623-120079822	HUVEC	blood vessel:	n/a	chr11:120079701-120079710
42	HDAC2	chr11:120079451-120079875	HepG2	liver:	n/a	n/a
43	POLR2A	chr11:120079508-120079821	HUVEC	blood vessel:	n/a	n/a
44	JUND	chr11:120079568-120079809	HepG2	liver:	n/a	chr11:120079699-120079710 chr11:120079699-120079711 chr11:120079702-120079713 chr11:120079701-120079709 chr11:120079699-120079710
45	CEBPB	chr11:120079326-120079865	Hela-S3	cervix:	n/a	chr11:120079660-120079673

No.	Distal block	Cell Line	Cell type
1	chr11:120061784..120063825-chr11:120078138..120080529,2	K562	blood:
2	chr11:120066886..120069148-chr11:120079541..120081080,2	K562	blood:
3	chr11:120079370..120085014-chr11:120104504..120109067,9	K562	blood:
4	chr11:120078701..120081046-chr11:120081423..120083396,2	K562	blood:

Variant related genes	Relation type
OAF	TF binding region
ENSG00000137709	Chromatin interaction
ENSG00000184232	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv518464	chr11:120040442-120109967	Genic enhancers Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	esv3322007	chr11:120079642-120084040	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120075200-120081000	Enhancers	Pancreas	Pancrea
2	chr11:120076200-120080600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:120076200-120080600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:120076600-120080600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:120077000-120080600	Enhancers	Fetal Stomach	stomach
6	chr11:120077000-120080800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:120078000-120081200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr11:120078200-120080800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:120078200-120080800	Enhancers	Spleen	Spleen
10	chr11:120078400-120079800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:120078400-120079800	Flanking Active TSS	HepG2	liver
12	chr11:120078400-120080000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:120078400-120080000	Enhancers	Brain Substantia Nigra	brain
14	chr11:120078400-120080000	Enhancers	Left Ventricle	heart
15	chr11:120078400-120080400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:120078400-120080400	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr11:120078400-120080600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:120078400-120080600	Enhancers	Adipose Nuclei	Adipose
19	chr11:120078400-120080600	Enhancers	Brain Anterior Caudate	brain
20	chr11:120078400-120080600	Enhancers	Brain Hippocampus Middle	brain
21	chr11:120078400-120080600	Enhancers	Colonic Mucosa	Colon
22	chr11:120078400-120080600	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr11:120078400-120080600	Enhancers	NHDF-Ad	bronchial
24	chr11:120078400-120080800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr11:120078400-120080800	Enhancers	Brain Angular Gyrus	brain
26	chr11:120078400-120080800	Enhancers	Brain Cingulate Gyrus	brain
27	chr11:120078400-120080800	Enhancers	Fetal Intestine Small	intestine
28	chr11:120078400-120080800	Enhancers	Fetal Muscle Trunk	muscle
29	chr11:120078400-120080800	Enhancers	Ovary	ovary
30	chr11:120078400-120081000	Enhancers	Esophagus	oesophagus
31	chr11:120078400-120081000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr11:120078400-120081000	Enhancers	Small Intestine	intestine
33	chr11:120078600-120079800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
34	chr11:120078600-120079800	Enhancers	Osteobl	bone
35	chr11:120078600-120080400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:120078600-120080400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr11:120078600-120080400	Enhancers	Muscle Satellite Cultured Cells	--
38	chr11:120078600-120080400	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr11:120078600-120080400	Enhancers	Fetal Muscle Leg	muscle
40	chr11:120078600-120080600	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr11:120078600-120080600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr11:120078600-120080600	Enhancers	Duodenum Mucosa	Duodenum
43	chr11:120078600-120080600	Enhancers	Hela-S3	cervix
44	chr11:120078600-120080800	Enhancers	Right Atrium	heart
45	chr11:120078600-120081000	Enhancers	HMEC	breast
46	chr11:120078600-120081000	Enhancers	HUVEC	blood vessel
47	chr11:120078800-120079800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
48	chr11:120078800-120079800	Enhancers	HSMMtube	muscle
49	chr11:120078800-120080600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr11:120078800-120080600	Enhancers	NHLF	lung

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