Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs151305	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs151368	0.86[AFR][1000 genomes]
rs151376	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs151377	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs151394	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs151395	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs151418	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs151419	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs151420	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs170872	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs367659	0.86[AFR][1000 genomes]
rs389974	0.86[AFR][1000 genomes]
rs439757	0.86[AFR][1000 genomes]
rs450780	0.86[AFR][1000 genomes]
rs456877	0.86[AFR][1000 genomes]
rs458318	0.86[AFR][1000 genomes]
rs458771	0.86[AFR][1000 genomes]
rs458779	0.86[AFR][1000 genomes]
rs460670	0.86[AFR][1000 genomes]
rs462060	0.86[AFR][1000 genomes]
rs462178	0.86[AFR][1000 genomes]
rs463373	0.86[AFR][1000 genomes]
rs463661	0.86[AFR][1000 genomes]
rs464114	0.86[AFR][1000 genomes]
rs464969	0.86[AFR][1000 genomes]
rs651551	0.86[AFR][1000 genomes]
rs6832846	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs151375	SLC39A8	cis	multi-tissue	Pritchard

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103120800-103122400	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr4:103122200-103122600	Enhancers	HMEC	breast
3	chr4:103122200-103122600	Enhancers	NHEK	skin

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