Variant report
Variant | rs1514124 |
---|---|
Chromosome Location | chr4:28557271-28557272 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1514125 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1514130 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs16880841 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1877708 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1877710 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2203363 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2458620 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2458623 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2471686 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2471706 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2471723 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2471724 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs28457793 | 0.95[AFR][1000 genomes] |
rs292020 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs292021 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2960594 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2995112 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs3110744 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs3114004 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs4434241 | 0.95[AFR][1000 genomes] |
rs57540276 | 0.95[AFR][1000 genomes] |
rs58079483 | 0.86[AFR][1000 genomes] |
rs59879030 | 0.95[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1010133 | chr4:28273244-28642942 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
2 | nsv1014938 | chr4:28277683-28642942 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | esv2757926 | chr4:28543958-28839437 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 3 gene(s) | inside rSNPs | diseases |
4 | esv2759239 | chr4:28543958-28839437 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:28556000-28560600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr4:28557000-28557800 | Enhancers | HUVEC | blood vessel |