Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13150344	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs151401	0.82[EUR][1000 genomes]
rs151404	0.82[EUR][1000 genomes]
rs151406	0.82[EUR][1000 genomes]
rs151407	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs151410	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs151411	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs151412	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs151415	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs233823	0.81[EUR][1000 genomes]
rs233828	0.82[EUR][1000 genomes]
rs233830	0.82[EUR][1000 genomes]
rs35166705	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs458870	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs460624	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs465164	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs621412	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs63519	0.82[EUR][1000 genomes]
rs651547	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs657985	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs659763	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs659812	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs680310	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103131800-103132400	Enhancers	H9 Cell Line	embryonic stem cell
2	chr4:103131800-103132400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:103132200-103132600	Enhancers	K562	blood

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