Variant report

Variant	rs1515917
Chromosome Location	chr2:150980204-150980205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:150978906..150980943-chr2:150982892..150984626,2	K562	blood:
2	chr2:150975080..150976928-chr2:150979468..150982260,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11903537	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16827831	0.95[ASN][1000 genomes]
rs17349160	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17349216	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67082067	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67402538	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72869702	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005441	chr2:150457624-151060247	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
5	nsv875285	chr2:150904671-150985765	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv469524	chr2:150927500-151076920	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:150977400-150981200	Weak transcription	NHLF	lung
2	chr2:150977400-150982200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:150977400-150982200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:150977600-150981600	Weak transcription	Liver	Liver
5	chr2:150977600-150982000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:150977600-150982200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:150977800-150982000	Enhancers	A549	lung
8	chr2:150977800-150990600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr2:150978000-150982200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr2:150978000-150982400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr2:150978200-150982200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr2:150978200-150982200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr2:150978400-150982200	Weak transcription	Brain Germinal Matrix	brain
14	chr2:150979200-150980800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr2:150979200-150985000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:150979200-150985000	Enhancers	NH-A	brain
17	chr2:150980000-150981400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:150980000-150981400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr2:150980000-150982000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:150980000-150982200	Weak transcription	Fetal Lung	lung
21	chr2:150980200-150981200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr2:150980200-150981200	Weak transcription	NHDF-Ad	bronchial
23	chr2:150980200-150981400	Weak transcription	Osteobl	bone
24	chr2:150980200-150981800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:150980200-150981800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr2:150980200-150982200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr2:150980200-150982200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links