The 2.0 version of rSNPBase

Variant report

Variant rs1517679
Chromosome Location chr2:99376685-99376686
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:99372200-99380800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
2 chr2:99373400-99378600 Enhancers Primary T killer naive cells fromperipheralblood blood
3 chr2:99373600-99377800 Enhancers HUVEC blood vessel
4 chr2:99373600-99378400 Enhancers Primary T regulatory cells fromperipheralblood blood
5 chr2:99373600-99378800 Enhancers Primary hematopoietic stem cells blood
6 chr2:99373800-99376800 Enhancers Primary mononuclear cells fromperipheralblood Blood
7 chr2:99373800-99378800 Enhancers Fetal Thymus thymus
8 chr2:99373800-99388000 Enhancers Primary monocytes fromperipheralblood blood
9 chr2:99374000-99377400 Enhancers Primary Natural Killer cells fromperipheralblood blood
10 chr2:99374000-99378000 Enhancers Primary neutrophils fromperipheralblood blood
11 chr2:99374600-99378200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
12 chr2:99374600-99383000 Enhancers Primary hematopoietic stem cells short term culture blood
13 chr2:99374600-99383200 Enhancers Primary B cells from peripheral blood blood
14 chr2:99374800-99378200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr2:99374800-99378800 Enhancers Primary T helper naive cells from peripheral blood blood
16 chr2:99374800-99378800 Enhancers Primary T helper naive cells fromperipheralblood blood
17 chr2:99374800-99379000 Enhancers Primary T helper 17 cells PMA-I stimulated --
18 chr2:99374800-99379000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr2:99374800-99379000 Weak transcription Right Atrium heart
20 chr2:99374800-99379200 Weak transcription Left Ventricle heart
21 chr2:99374800-99379400 Weak transcription Colonic Mucosa Colon
22 chr2:99374800-99381000 Enhancers Primary T helper cells fromperipheralblood blood
23 chr2:99374800-99381400 Enhancers Primary T cells fromperipheralblood blood
24 chr2:99374800-99382000 Weak transcription Sigmoid Colon Sigmoid Colon
25 chr2:99375000-99377600 Weak transcription Breast Myoepithelial Primary Cells Breast
26 chr2:99375000-99377600 Enhancers Primary T cells from cord blood blood
27 chr2:99375000-99378000 Weak transcription Adipose Nuclei Adipose
28 chr2:99375000-99378600 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
29 chr2:99375000-99379400 Enhancers Primary T helper cells PMA-I stimulated --
30 chr2:99375200-99376800 Weak transcription HMEC breast
31 chr2:99375200-99377600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr2:99375200-99377600 Weak transcription Cortex derived primary cultured neurospheres brain
33 chr2:99375200-99377800 Weak transcription Brain Cingulate Gyrus brain
34 chr2:99375200-99377800 Weak transcription Brain Hippocampus Middle brain
35 chr2:99375200-99378600 Enhancers Dnd41 blood
36 chr2:99375200-99379400 Enhancers Primary T killer memory cells from peripheral blood blood
37 chr2:99375200-99381000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
38 chr2:99375200-99386200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr2:99375200-99386400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr2:99375400-99376800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr2:99375600-99376800 Weak transcription Placenta Placenta
42 chr2:99375600-99377800 Weak transcription Fetal Muscle Leg muscle
43 chr2:99375600-99378000 Weak transcription Skeletal Muscle Female skeletal muscle
44 chr2:99376400-99376800 Enhancers Duodenum Mucosa Duodenum
45 chr2:99376400-99376800 Enhancers Lung lung
46 chr2:99376400-99376800 Flanking Active TSS Monocytes-CD14+_RO01746 blood
47 chr2:99376400-99379600 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
48 chr2:99376400-99379800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
49 chr2:99376600-99376800 Flanking Active TSS Primary B cells from cord blood blood
50 chr2:99376600-99376800 Enhancers Brain Substantia Nigra brain

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Last update: Aug 31, 2015