Variant report

Variant	rs1517778
Chromosome Location	chr2:76989978-76989979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10186864	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11126561	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs12713882	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs13014978	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs1400848	1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1400849	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1517779	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1517780	0.94[CEU][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2222178	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2222179	0.94[CEU][hapmap];0.84[YRI][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2222180	0.93[CEU][hapmap];0.84[YRI][hapmap];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4564799	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6730015	0.94[CEU][hapmap];0.92[YRI][hapmap]
rs7563920	0.94[CEU][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv582235	chr2:76881210-76997763	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv874320	chr2:76971709-77013724	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	nsv458263	chr2:76976626-76994984	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
4	nsv1011401	chr2:76982546-77068714	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76988000-76998400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:76988200-76990400	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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