Variant report

Variant	rs1519942
Chromosome Location	chr8:89208622-89208623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:89208118..89210006-chr8:89216241..89218835,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10504847	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504848	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990055	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11996222	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519941	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17666351	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17722347	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17722407	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28904630	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59592564	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89160800-89217200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:89177200-89214400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:89177200-89216400	Weak transcription	Brain Germinal Matrix	brain
4	chr8:89195000-89219200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr8:89195800-89210600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:89196600-89214200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:89196800-89214800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:89201200-89218000	Weak transcription	Fetal Lung	lung
9	chr8:89203200-89211000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:89204000-89219600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:89204200-89217200	Weak transcription	NH-A	brain
12	chr8:89207200-89210600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:89207600-89210200	Weak transcription	Fetal Intestine Small	intestine
14	chr8:89207800-89209000	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr8:89207800-89210200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr8:89208000-89211000	Weak transcription	Fetal Kidney	kidney
17	chr8:89208000-89215800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:89208000-89217200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr8:89208400-89209400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr8:89208400-89211400	Enhancers	Fetal Intestine Large	intestine

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