Variant report

Variant	rs1520531
Chromosome Location	chr15:56660845-56660846
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1545	chr15:56659498-56897381	Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1046891	chr15:56659587-56792033	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv471330	chr15:56659709-56896385	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471506	chr15:56659709-56896385	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56657200-56663200	Active TSS	GM12878-XiMat	blood
2	chr15:56658000-56662800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:56658200-56661400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:56658200-56661400	Weak transcription	Small Intestine	intestine
5	chr15:56658200-56675400	Weak transcription	Pancreas	Pancrea
6	chr15:56658800-56661200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:56658800-56661200	Weak transcription	HMEC	breast
8	chr15:56658800-56661400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:56658800-56661400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:56658800-56661400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr15:56658800-56669600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr15:56659000-56661400	Weak transcription	NHEK	skin
13	chr15:56659400-56666800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr15:56659600-56661400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr15:56659600-56661400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:56659600-56661400	Weak transcription	Fetal Brain Male	brain
17	chr15:56659600-56664000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr15:56659600-56675400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr15:56659800-56661400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:56659800-56661400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:56659800-56662000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr15:56659800-56662200	Enhancers	Brain Germinal Matrix	brain
23	chr15:56659800-56662400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr15:56659800-56663000	Weak transcription	Fetal Brain Female	brain
25	chr15:56659800-56664200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr15:56660000-56661400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr15:56660400-56674400	Weak transcription	Hela-S3	cervix
28	chr15:56660600-56661000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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