Variant report

Variant	rs1520642
Chromosome Location	chr3:34576091-34576092
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12632484	0.93[ASN][1000 genomes]
rs12636370	0.87[ASN][1000 genomes]
rs13353395	0.93[ASN][1000 genomes]
rs28668619	0.86[ASN][1000 genomes]
rs6765600	0.93[ASN][1000 genomes]
rs6776887	0.93[ASN][1000 genomes]
rs6777100	0.93[ASN][1000 genomes]
rs6792099	0.96[ASN][1000 genomes]
rs6801572	0.87[ASN][1000 genomes]
rs9881051	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007906	chr3:34466966-34607465	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34574000-34576400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:34575400-34576200	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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