Variant report
| Variant | rs1520785 |
|---|---|
| Chromosome Location | chr12:119082899-119082900 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TAOK3-2 | chr12:119082654-119083334 | XLOC_010213 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs11069041 | 0.83[ASN][1000 genomes] |
| rs11610340 | 0.81[CHB][hapmap];1.00[JPT][hapmap] |
| rs12228072 | 0.81[ASN][1000 genomes] |
| rs1520778 | 0.93[GIH][hapmap] |
| rs1851093 | 1.00[JPT][hapmap] |
| rs2649959 | 0.97[ASN][1000 genomes] |
| rs2682783 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2730750 | 0.91[EUR][1000 genomes] |
| rs35123196 | 0.84[ASN][1000 genomes] |
| rs4238055 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7306358 | 0.83[ASN][1000 genomes] |
| rs8181621 | 0.88[AFR][1000 genomes];0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv930978 | chr12:118866332-119450600 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv1043906 | chr12:118991884-119087146 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:4)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1520785 | MLEC | cis | cerebellum | SCAN |
| rs1520785 | RNF10 | cis | cerebellum | SCAN |
| rs1520785 | PLBD2 | cis | cerebellum | SCAN |
| rs1520785 | TESC | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
