Variant report

Variant	rs1521052
Chromosome Location	chr2:67772559-67772560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12998432	0.80[EUR][1000 genomes]
rs12998660	0.80[EUR][1000 genomes]
rs13022809	0.80[EUR][1000 genomes]
rs1521050	0.81[EUR][1000 genomes]
rs1568469	0.94[EUR][1000 genomes]
rs2541015	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2541028	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2541030	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2541031	0.94[EUR][1000 genomes]
rs2541034	0.89[EUR][1000 genomes]
rs2683676	0.89[EUR][1000 genomes]
rs2683682	0.80[EUR][1000 genomes]
rs2683683	0.89[EUR][1000 genomes]
rs35250398	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	esv3335541	chr2:67577544-67773907	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67768000-67773200	Weak transcription	Pancreas	Pancrea
2	chr2:67768600-67776200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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