Variant report

Variant	rs1522018
Chromosome Location	chr2:169751113-169751114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11893114	1.00[JPT][hapmap]
rs16823013	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs16856030	1.00[JPT][hapmap]
rs16856059	1.00[JPT][hapmap]
rs16856065	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs2272060	0.98[ASN][1000 genomes]
rs2272061	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2272062	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2293130	1.00[GIH][hapmap]
rs3814384	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4148798	1.00[GIH][hapmap]
rs6749007	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583599	chr2:169664227-169903096	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169747000-169757600	Weak transcription	Pancreas	Pancrea
2	chr2:169747600-169751600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:169747600-169753200	Weak transcription	K562	blood
4	chr2:169751000-169752600	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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