Variant report

Variant	rs1522452
Chromosome Location	chr4:149035872-149035873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17024456	0.87[TSI][hapmap]
rs17483391	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17483854	0.87[GIH][hapmap];0.92[TSI][hapmap]
rs17579697	1.00[ASW][hapmap]
rs3846302	0.88[TSI][hapmap]
rs7693077	0.83[TSI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1522452	EDNRA	cis	parietal	SCAN

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149002600-149036600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:149004600-149052400	Weak transcription	Esophagus	oesophagus
3	chr4:149012600-149037400	Weak transcription	NHLF	lung
4	chr4:149015600-149037600	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:149018000-149085800	Weak transcription	Stomach Mucosa	stomach
6	chr4:149020800-149042400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr4:149022400-149042600	Weak transcription	Small Intestine	intestine
8	chr4:149024000-149041000	Weak transcription	Fetal Kidney	kidney
9	chr4:149024000-149068600	Weak transcription	Right Ventricle	heart
10	chr4:149024600-149040200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:149024800-149039000	Weak transcription	Gastric	stomach
12	chr4:149026000-149037600	Weak transcription	Fetal Lung	lung
13	chr4:149026200-149039200	Weak transcription	Psoas Muscle	Psoas
14	chr4:149026200-149042000	Weak transcription	Fetal Heart	heart
15	chr4:149026200-149044600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr4:149028400-149044200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr4:149028800-149036800	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr4:149029400-149036200	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr4:149029400-149036800	Weak transcription	HUVEC	blood vessel
20	chr4:149029400-149038400	Weak transcription	Thymus	Thymus
21	chr4:149029600-149036200	Strong transcription	Duodenum Mucosa	Duodenum
22	chr4:149030000-149036200	Strong transcription	Sigmoid Colon	Sigmoid Colon
23	chr4:149030600-149037400	Weak transcription	Fetal Stomach	stomach
24	chr4:149030600-149037600	Weak transcription	Fetal Intestine Small	intestine
25	chr4:149030600-149038200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:149030600-149038400	Weak transcription	Aorta	Aorta
27	chr4:149030600-149038400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr4:149030600-149038800	Weak transcription	Colonic Mucosa	Colon
29	chr4:149030600-149039400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr4:149030800-149039000	Weak transcription	Pancreas	Pancrea
31	chr4:149030800-149039200	Weak transcription	Brain Anterior Caudate	brain
32	chr4:149030800-149067000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr4:149031200-149044400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr4:149031600-149043400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr4:149033200-149038400	Weak transcription	Fetal Intestine Large	intestine
36	chr4:149033800-149036400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr4:149033800-149047000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr4:149034000-149036000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr4:149034000-149036200	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr4:149034000-149036200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr4:149034000-149036800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr4:149034000-149037200	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr4:149034000-149037600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr4:149034000-149037600	Weak transcription	NHDF-Ad	bronchial
45	chr4:149034200-149037400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr4:149034800-149036400	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr4:149035000-149038200	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr4:149035000-149043600	Weak transcription	Primary B cells from peripheral blood	blood
49	chr4:149035200-149037600	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr4:149035200-149038000	Enhancers	HSMM	muscle

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