Variant report

Variant	rs1524710
Chromosome Location	chr1:57951149-57951150
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10889057	1.00[AMR][1000 genomes]
rs1404389	1.00[AMR][1000 genomes]
rs1417761	1.00[AMR][1000 genomes]
rs1524712	1.00[AMR][1000 genomes]
rs1547792	0.82[YRI][hapmap]
rs1547793	0.90[YRI][hapmap]
rs1815685	1.00[AMR][1000 genomes]
rs1935045	1.00[AMR][1000 genomes]
rs2691429	0.90[YRI][hapmap]
rs2691455	1.00[AMR][1000 genomes]
rs2793649	0.90[YRI][hapmap]
rs7551052	1.00[AMR][1000 genomes]
rs947237	1.00[AMR][1000 genomes]
rs947241	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv870908	chr1:57884310-58037783	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1012555	chr1:57950355-58103389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57940800-57954800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:57943200-57955200	Weak transcription	Stomach Mucosa	stomach
3	chr1:57949600-57952200	Enhancers	NHDF-Ad	bronchial
4	chr1:57949800-57951200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:57949800-57951200	Weak transcription	NH-A	brain
6	chr1:57949800-57954600	Weak transcription	NHEK	skin
7	chr1:57950000-57951200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:57950000-57951200	Weak transcription	NHLF	lung
9	chr1:57950400-57951800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:57950800-57952400	Enhancers	Hela-S3	cervix
11	chr1:57951000-57952200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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